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Sample GSM2562678 Query DataSets for GSM2562678
Status Public on Jun 26, 2017
Title muscle_control_animal2_rep3
Sample type RNA
 
Source name tibialis anterior, control
Organism Mus musculus
Characteristics strain/background: C57BL6/J;129S1/SvImJ
genotype/variation: Myf6 cre/+; Hira flox/+
tissue: muscle, tibialis anterior
age: 6 weeks
animal: 2
Extracted molecule total RNA
Extraction protocol Tibialis anterior muscles were dissected in PBS and flash frozen in liquid nitrogen. RNA was extracted using Trizol reagent.
Label Cy5
Label protocol 5 micrograms Cy5-labelled total RNA.
 
Hybridization protocol Phalanx Biotech One Array Plus protocol. Each sample was hybridized in triplicate.
Scan protocol Agilent 0.1 XDR protocol.
Data processing Normalization was performed using median scaling normalization method.
 
Submission date Apr 03, 2017
Last update date Jun 27, 2017
Contact name M. David Stewart
Organization name University of Houston
Street address 4800 Calhoun Rd
City Houston
State/province TX
ZIP/Postal code 77204-5001
Country USA
 
Platform ID GPL13692
Series (1)
GSE97359 Effect of HIRA deletion on gene expression in mouse skeletal muscle at 6 weeks of age

Data table header descriptions
ID_REF
VALUE Normalized signal intensity

Data table
ID_REF VALUE
mMC000770 12419.125
mMC000772 28889.66667
mMC000773 1739.645833
mMC000774 24385.875
mMC000776 130.2083333
mMC000780 732.9583333
mMC000784 154.2916667
mMC000785 1150.854167
mMC000790 537.1041667
mMC000792 72.375
mMC000796 8964.854167
mMC000801 730.5
mMC000804 1980.416667
mMC000805 136.125
mMC000811 12275.5
mMC000813 1660.583333
mMC000817 14548.625
mMC000821 109.625
mMC000826 52.04166667
mMC000828 695.6666667

Total number of rows: 26423

Table truncated, full table size 597 Kbytes.




Supplementary file Size Download File type/resource
GSM2562678_H006-3111104434.gpr.gz 1.5 Mb (ftp)(http) GPR
Processed data included within Sample table

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