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Sample GSM27157

Query DataSets for GSM27157

Status

Public on Nov 05, 2004

Title

HNF6_1+

Sample type

RNA

Source name

INS-1 cell line #1 with induced HNF6

Organism

Rattus norvegicus

Extracted molecule

total RNA

Description

A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and induced cells, target genes of introduced transcription factor can be identified. This entry corresponds to the RNA isolated from tet-induced INS1 cell line #1 containing hepatocyte nuclear factor-6 (HNF6; onecut1).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF6
Keywords = onecut1
Keywords = tetracycline
Keywords = FRT

Submission date

Jul 21, 2004

Last update date

May 27, 2005

Contact name

Ludger Klein-Hitpass

E-mail(s)

ludger.klein-hitpass@uni-essen.de

Phone

+49 201 723 85552

Organization name

Institut fuer Zellbiologie

Department

Universitaetsklinikum

Lab

BioChip Lab

Street address

Virchowstr. 173

City

Essen

ZIP/Postal code

D-45122

Country

Germany

Platform ID

GPL341

Series (2)

GSE1589	Targets of HNF1b, HNF4a2 and HNF6 in INS-1 cells
GSE6428	HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
ID_REF
VALUE	�signal�, a measure of the abundance of the transcript
ABS_CALL	the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE	p-value that indicates the significance level of the detection call

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	247.6	P	0.003595
AFFX-BioB-M_at	519.9	P	0.00034
AFFX-BioB-3_at	128.8	P	0.013811
AFFX-BioC-5_at	722.7	P	0.00011
AFFX-BioC-3_at	487.6	P	0.000052
AFFX-BioDn-5_at	535.3	P	0.001248
AFFX-BioDn-3_at	3670	P	0.000169
AFFX-CreX-5_at	6959	P	0.000044
AFFX-CreX-3_at	14841.6	P	0.000044
AFFX-DapX-5_at	221.5	P	0.00011
AFFX-DapX-M_at	468.8	P	0.002867
AFFX-DapX-3_at	356.7	P	0.000258
AFFX-LysX-5_at	1345.2	P	0.000044
AFFX-LysX-M_at	1882.6	P	0.000044
AFFX-LysX-3_at	3200.2	P	0.000044
AFFX-PheX-5_at	7248.4	P	0.000044
AFFX-PheX-M_at	9042.8	P	0.000044
AFFX-PheX-3_at	10016.6	P	0.000044
AFFX-ThrX-5_at	1313.6	P	0.000052
AFFX-ThrX-M_at	1476.3	P	0.000044

Total number of rows: 15923

Table truncated, full table size 431 Kbytes.

Supplementary data files not provided