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Sample GSM27163 Query DataSets for GSM27163
Status Public on Nov 05, 2004
Title P328L329_del5a+
Sample type RNA
 
Source name INS-1 cell line #5a with induced HNF1b mutant P328L329del
Organism Rattus norvegicus
Extracted molecule total RNA
 
Description A rat insulinoma cell line (INS-1) was generated that contains a FRT site for FLP recombinase mediated site specific integration of specific genes. In addition, the line contains the tetracycline repressor allowing tetracycline (tet) induction of the introduced gene. By comparing the gene expression profiles of uninduced and tet-induced cells, target genes of introduced transcription factors can be identified. This entry corresponds to the RNA isolated from tet-induced INS-1 cell line #5a containing MODY5 mutant P328L329delCCTCT of hepatocyte nuclear factor-1b (HNF1b).
Keywords = INS-1
Keywords = beta-cell
Keywords = HNF1b
Keywords = P328L329
Keywords = MODY5
Keywords = tetracycline
Keywords = FRT
 
Submission date Jul 21, 2004
Last update date May 27, 2005
Contact name Ludger Klein-Hitpass
E-mail(s) ludger.klein-hitpass@uni-essen.de
Phone +49 201 723 85552
Organization name Institut fuer Zellbiologie
Department Universitaetsklinikum
Lab BioChip Lab
Street address Virchowstr. 173
City Essen
ZIP/Postal code D-45122
Country Germany
 
Platform ID GPL341
Series (2)
GSE1590 Targets of HNF1b mutants in INS-1
GSE6428 HNF1b, HNF4a2 and HNF6 targets

Data table header descriptions
ID_REF
VALUE ‘signal’, a measure of the abundance of the transcript
ABS_CALL the call in an absolute analysis that indicates whether a transcript is reliably detected (Present, P) or not detected (Absent, A)
DETECTION P-VALUE p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 329.5 P 0.00141
AFFX-BioB-M_at 543.1 P 0.000225
AFFX-BioB-3_at 163.1 P 0.00762
AFFX-BioC-5_at 761.4 P 0.000095
AFFX-BioC-3_at 455.8 P 0.000052
AFFX-BioDn-5_at 842.4 P 0.000754
AFFX-BioDn-3_at 4743 P 0.00034
AFFX-CreX-5_at 7139.9 P 0.000044
AFFX-CreX-3_at 11876.1 P 0.000044
AFFX-DapX-5_at 198.9 P 0.000169
AFFX-DapX-M_at 373.8 P 0.004484
AFFX-DapX-3_at 312.1 P 0.000509
AFFX-LysX-5_at 1033.3 P 0.000044
AFFX-LysX-M_at 1282.9 P 0.000044
AFFX-LysX-3_at 2500.6 P 0.000044
AFFX-PheX-5_at 6036.1 P 0.000044
AFFX-PheX-M_at 6679.7 P 0.000044
AFFX-PheX-3_at 7507.4 P 0.000044
AFFX-ThrX-5_at 913.6 P 0.000044
AFFX-ThrX-M_at 1199.5 P 0.000044

Total number of rows: 15923

Table truncated, full table size 432 Kbytes.




Supplementary data files not provided

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