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Sample GSM303532 Query DataSets for GSM303532
Status Public on Sep 02, 2008
Title Normal, synovial membrane patient J7 (U133B)
Sample type RNA
 
Source name synovial membrane patient J7 (normal control)
Organism Homo sapiens
Characteristics sex: m
age: 39
normal control
Biomaterial provider Clinic for Orthopedics, Eisenberg, Germany
Treatment protocol none
Extracted molecule total RNA
Extraction protocol according RNeasy Kit, Qiagen
Label biotin
Label protocol according to supplier´s instructions, Affymetrix
 
Hybridization protocol according to supplier´s instructions, Affymetrix
Scan protocol by laser scanning (Hewlett Packard gene scanner)
Description see publication for details
Data processing background corrected signal intensities were determined using the MAS 5.0 software (Affymetrix)
 
Submission date Jul 04, 2008
Last update date Sep 02, 2008
Contact name René Huber
E-mail(s) huber.rene@mh-hannover.de
Phone +49 511 5322529
Fax +49 511 5328614
Organization name Hannover Medical School
Department Institute for Clinical Chemistry
Lab Research
Street address Carl-Neuberg-Str. 1
City Hannover
State/province Lower Saxony
ZIP/Postal code 30625
Country Germany
 
Platform ID GPL97
Series (1)
GSE12021 Identification of inter-individual and gene-specific variances in mRNA expression profiles in the RA SM

Data table header descriptions
ID_REF
VALUE signal intensity
ABS_CALL presence/absence call
DETECTION P-VALUE significance of 0-hypothesis ("not expressed")

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 845.554 P 0.00110197
AFFX-BioB-M_at 1510.81 P 0.000753643
AFFX-BioB-3_at 916.954 P 0.0020226
AFFX-BioC-5_at 3387.23 P 5.16732e-05
AFFX-BioC-3_at 3019.29 P 5.16732e-05
AFFX-BioDn-5_at 2091.71 P 0.000662269
AFFX-BioDn-3_at 9928.89 P 0.000126798
AFFX-CreX-5_at 20714.9 P 4.42873e-05
AFFX-CreX-3_at 32043 P 4.42873e-05
AFFX-DapX-5_at 74.6094 A 0.327079
AFFX-DapX-M_at 24.6228 A 0.824672
AFFX-DapX-3_at 8.49364 A 0.966323
AFFX-LysX-5_at 79.3945 A 0.239063
AFFX-LysX-M_at 32.952 A 0.749204
AFFX-LysX-3_at 85.2692 A 0.239063
AFFX-PheX-5_at 12.2235 A 0.891021
AFFX-PheX-M_at 13.7007 A 0.897835
AFFX-PheX-3_at 88.1625 A 0.440646
AFFX-ThrX-5_at 23.4357 A 0.910522
AFFX-ThrX-M_at 20.3731 A 0.860518

Total number of rows: 22645

Table truncated, full table size 659 Kbytes.




Supplementary file Size Download File type/resource
GSM303532_J_7_B.CEL.gz 3.5 Mb (ftp)(http) CEL
Processed data included within Sample table

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