|
| Status |
Public on Feb 06, 2024 |
| Title |
Non-migrant eye, 30dpf, 3 |
| Sample type |
SRA |
| |
|
| Source name |
Non-migrant eye
|
| Organism |
Scophthalmus maximus |
| Characteristics |
tissue: Non-migrant eye
age: 30dpf
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from the tissues and purified using the RNeasy Mini Kit (Qiagen) following the manufacturer’s intructions.
BGISEQ-500 stranded mRNA library
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
BGISEQ-500 |
| |
|
| Data processing |
Good-quality raw reads were aligned against the turbot genome assembly (ASM318616v1) using STAR v2.7.0e alignment software
Reads were assigned to unique genes with HTseq software v0.10.0
Assembly: ASM318616v1
Supplementary files format and content: text file including raw counts for each sample
|
| |
|
| Submission date |
Oct 18, 2023 |
| Last update date |
Feb 06, 2024 |
| Contact name |
Laura Guerrero Peña |
| E-mail(s) |
lguerrero@iim.csic.es
|
| Phone |
+34 986231930
|
| Organization name |
CSIC
|
| Department |
Aquaculture and Biotecnology
|
| Lab |
Rotllant's Lab
|
| Street address |
Eduardo Cabello, 8
|
| City |
Vigo |
| State/province |
Pontevedra |
| ZIP/Postal code |
36208 |
| Country |
Spain |
| |
|
| Platform ID |
GPL33853 |
| Series (1) |
| GSE245741 |
Unraveling the Genetic Landscape of Eye Migration and Visual Adaptation during Flatfish Metamorphosis |
|
| Relations |
| BioSample |
SAMN37876254 |
| SRA |
SRX22130101 |
