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Sample GSM82297 Query DataSets for GSM82297
Status Public on Apr 30, 2007
Title 1989_d_1
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description during treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (1)
GSE3578 Activated Cell Death Pathway

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 11099.3398 109.4766 G 124.5557 11176.3398 4600 11380.3027 193 15.67594433 89.72961926 78.2749 77 8.4864 219 109.4766
1002 1 1083.7767 10.6897 G 12.3175 1163.7767 1315 592.439 105 11.56244564 94.48120295 80 80 9.6541 179 10.6897
1003 1 -1.58 -0.0156 L 0.8341 79.42 76 10.1747 50 7.978845596 95.21397559 81.2727 81 9.476 103 -0.0156
1004 1 1.5932 0.0157 L 0.8795 81.5932 78 10.9376 59 8.667244911 92.76836364 79.7417 80 8.5122 124 0.0157
1005 1 6.6176 0.0653 L 0.9097 84.6176 84 13.0136 34 6.579524517 93.0163594 79.1703 78 10.0109 188 0.0653
1006 1 27.9048 0.2752 G 1.1432 108.9048 109 14.0008 63 8.956232071 95.265151 81.2841 81 9.5101 182 0.2752
1007 1 19.5345 0.1927 G 1.0545 100.5345 101 11.3445 58 8.59348011 95.33846074 80.3222 81 9.559 186 0.1927
1008 1 11080.9375 109.295 G 119.3649 11160.9375 4562 11470.5244 193 15.67594433 93.50267047 79.6651 80 9.0018 223 109.295
1009 1 490.8218 4.8411 G 6.1423 569.8218 630 250.5452 103 11.45179749 92.77027682 80.0444 79 9.1802 186 4.8411
1010 1 698.4896 6.8894 G 8.5184 777.4896 891 404.4589 96 11.05581284 91.2721598 78.3204 79 8.1814 187 6.8894
1011 1 312.5361 3.0826 G 4.3677 390.5361 413 144.6384 97 11.11324596 89.4151173 78.0989 78 7.6101 188 3.0826
1012 1 39.1912 0.3866 G 1.2884 117.1912 112 18.7509 68 9.304853439 90.95592675 78.5304 78 8.6373 187 0.3866
1013 1 28.5946 0.282 G 1.1794 105.5946 106 13.5237 74 9.706685066 89.53328844 76.2948 77 8.3555 179 0.282
1014 1 6.314 0.0623 L 0.9102 87.314 89 10.749 86 10.46415806 95.92968359 81.6055 81 9.9531 226 0.0623
1015 1 10920.8867 107.7164 G 112.356 11003.8867 6140 11192.4697 196 15.79730797 97.93766423 83.9648 83 9.9584 235 107.7164
1016 1 34.8429 0.3437 G 1.2019 115.8429 116 13.6619 70 9.44069767 96.38576511 81.0833 81 10.2572 186 0.3437
1017 1 22.3279 0.2202 G 1.0993 102.3279 102 12.0092 61 8.812923431 93.08861367 79.5385 80 8.7257 188 0.2202
1018 1 15.8095 0.1559 G 1.03 92.8095 92 10.7066 42 7.312732697 90.10658729 77.6099 77 8.7377 188 0.1559
1019 1 12.5278 0.1236 L 0.9734 91.5278 94 14.9787 36 6.770275116 94.03107938 79.4945 79 10.0207 188 0.1236
1020 1 24.3333 0.24 G 1.11 105.3333 106 13.1753 63 8.956232071 94.896282 81.1943 81 9.2642 181 0.24

Total number of rows: 54359

Table truncated, full table size 5832 Kbytes.




Supplementary file Size Download File type/resource
GSM82297.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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