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Sample GSM82368 Query DataSets for GSM82368
Status Public on Apr 30, 2007
Title 1243_p_2
Sample type RNA
 
Source name biopsy
Organism Homo sapiens
Characteristics female, cervical cancer
Extracted molecule total RNA
Extraction protocol ISOGEN(Wako pure chemical)+RNeasy(QIAGEN)
Label Cy5
Label protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270813678-B500%29?OpenDocument&hometitle=WebDocs
 
Hybridization protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3ACodeLink+Gene+E%28270810969-B500%29?OpenDocument&hometitle=WebDocs
Scan protocol http://www4.amershambiosciences.com/APTRIX/upp00919.nsf/Content/WD%3AScanning+CodeLi%28248345081-B500%29?OpenDocument&hometitle=WebDocs
Description prior to treatment, radiotherapy alone
Data processing global median normalization
 
Submission date Nov 08, 2005
Last update date Oct 23, 2008
Contact name Shuhei Noda
E-mail(s) s_noda@nirs.go.jp
Organization name National institute of radiological sciences
Department Frontier research center
Street address Anagawa 4-9-1
City Chiba
State/province Chiba
ZIP/Postal code 2658333
Country Japan
 
Platform ID GPL2895
Series (2)
GSE3578 Activated Cell Death Pathway
GSE20167 Gene expression profiles of cervical cancers for novel molecular classification

Data table header descriptions
ID_REF
Array Logical array
Raw_intensity Raw signal intensity value
VALUE same as UNF_VALUE but with flagged values removed
Quality_flag CodeLink software excludes 'M' flagged spots in the analysis. The spot is identified to be defective through image inspection at manufacturing, and is flagged to indicate exclusion from further analysis. No expression value is provided for this flag.
Signal_strength Signal strength
Spot_mean Spot median
Spot_median Spot median
Spot_stdev Spot standard deviation
Spot_area Spot area
Spot_diameter Spot diameter
Spot_noise_level Spot noise level
Bkgd_mean Background mean
Bkgd_median Background median
Bkgd_stdev Background standard deviation
Bkgd_area Background area
UNF_VALUE Median normalized signal intensity value

Data table
ID_REF Array Raw_intensity VALUE Quality_flag Signal_strength Spot_mean Spot_median Spot_stdev Spot_area Spot_diameter Spot_noise_level Bkgd_mean Bkgd_median Bkgd_stdev Bkgd_area UNF_VALUE
1001 1 13853.4229 235.4542 G 142.3288 13934.4229 5299 15116.6455 151 13.86575508 97.90302607 81.1583 81 11.2687 124 235.4542
1002 1 600.4235 10.2049 G 7.2374 678.4235 731 325.7545 85 10.40314198 93.7381056 77.9832 78 10.4921 185 10.2049
1003 1 3.3103 0.0563 L 0.867 82.3103 82 11.2406 29 6.076507568 94.94207079 80.3242 79 10.628 188 0.0563
1004 1 15.3953 0.2617 G 1.0052 94.3953 97 11.1107 43 7.39927721 93.90699497 78.768 79 9.938 187 0.2617
1005 1 6.8889 0.1171 L 0.9218 84.8889 87 11.9112 36 6.770275116 92.09234406 77.7912 78 9.3949 188 0.1171
1006 1 32.7551 0.5567 G 1.1841 108.7551 105 14.5146 49 7.898653984 91.84594512 76.7198 76 10.564 188 0.5567
1007 1 53.0694 0.902 G 1.4058 132.0694 133 20.7915 72 9.574614525 93.94503648 79.2582 79 9.9634 188 0.902
1008 1 16268.667 276.5039 G 165.8856 16349.667 7914 17279.6719 161 14.31752682 98.55989922 82.575 81 11.7066 124 276.5039
1009 1 569.1848 9.6739 G 6.9135 648.1848 769 299.6636 92 10.82303238 93.75703834 79.6289 79 9.838 165 9.6739
1010 1 470.8864 8.0032 G 5.9436 547.8864 650 251.6816 88 10.58513451 92.18125949 77.4199 77 10.1208 187 8.0032
1011 1 64.9211 1.1034 G 1.5483 141.9211 143 25.48 76 9.836981773 91.66219635 78.3516 77 9.7748 188 1.1034
1012 1 61.9275 1.0525 G 1.5042 140.9275 139 23.4653 69 9.373021126 93.69031944 78.4176 79 9.7935 188 1.0525
1013 1 30.4697 0.5179 G 1.1711 110.4697 109 11.6375 66 9.166996002 94.32676403 79.5549 80 9.5512 188 0.5179
1014 1 8.9688 0.1524 L 0.921 85.9688 87 10.4746 32 6.383076668 93.33875606 77.1538 77 10.8925 188 0.1524
1015 1 15078.9766 256.2838 G 152.6877 15159.9766 6592 15638.2217 131 12.91489029 99.28746854 81.967 81 12.1916 188 256.2838
1016 1 35.322 0.6003 G 1.2115 116.322 113 16.2412 59 8.667244911 96.01836096 81.5714 81 10.0122 188 0.6003
1017 1 19.2 0.3263 G 1.0073 103.2 104 15.0898 35 6.675580978 102.4483604 84.022 84 12.2989 188 0.3263
1018 1 13.25 0.2252 L 0.9654 97.25 98 15.5105 36 6.770275116 100.7364934 84.2692 84 11.1577 188 0.2252
1019 1 6.2692 0.1066 L 0.8648 91.2692 90 13.3505 52 8.136857986 105.5397664 85.6167 85 13.6932 124 0.1066
1020 1 18.1591 0.3086 L 0.9624 103.1591 106 18.4131 44 7.484820843 107.1891622 85.8407 85 14.7928 188 0.3086

Total number of rows: 54359

Table truncated, full table size 5809 Kbytes.




Supplementary file Size Download File type/resource
GSM82368.TXT.gz 2.3 Mb (ftp)(http) TXT
Processed data included within Sample table
Processed data provided as supplementary file
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