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    Btbd16 BTB domain containing 16 [ Mus musculus (house mouse) ]

    Gene ID: 330660, updated on 9-Aug-2024

    Summary

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    Official Symbol
    Btbd16provided by MGI
    Official Full Name
    BTB domain containing 16provided by MGI
    Primary source
    MGI:MGI:3045247
    See related
    Ensembl:ENSMUSG00000040298 AllianceGenome:MGI:3045247
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    E330040A16Rik
    Summary
    Is expressed in prostate gland; testis; and thyroid gland. Orthologous to human BTBD16 (BTB domain containing 16). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Restricted expression toward testis adult (RPKM 51.0) See more
    Orthologs
    human all
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    Genomic context

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    See Btbd16 in Genome Data Viewer
    Location:
    7 F3; 7 73.19 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (130375799..130427631)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (130774069..130825901)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene transforming, acidic coiled-coil containing protein 2 Neighboring gene predicted gene, 34283 Neighboring gene STARR-seq mESC enhancer starr_20265 Neighboring gene histone H2A.Z-like Neighboring gene STARR-seq mESC enhancer starr_20267 Neighboring gene STARR-positive B cell enhancer ABC_E8213 Neighboring gene predicted gene, 53377 Neighboring gene pleckstrin homology domain containing, family A (phosphoinositide binding specific) member 1 Neighboring gene STARR-seq mESC enhancer starr_20271 Neighboring gene predicted gene 5602

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. High-throughput discovery of novel developmental phenotypes. Dickinson ME, et al. Nature, 2016 Sep 22. PMID 27626380, Free PMC Article
    2. The International Mouse Phenotyping Consortium Web Portal, a unified point of access for knockout mice and related phenotyping data. Koscielny G, et al. Nucleic Acids Res, 2014 Jan. PMID 24194600, Free PMC Article
    3. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 
    • Targeted (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    BTB/POZ domain-containing protein 16
    Names
    BTB (POZ) domain containing 16

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001081038.2 → NP_001074507.2  BTB/POZ domain-containing protein 16 isoform 1

      See identical proteins and their annotated locations for NP_001074507.2

      Status: VALIDATED

      Source sequence(s)
      AC115697, BB559682, BB666983, BY255452, CF580876
      Consensus CDS
      CCDS52416.1
      UniProtKB/Swiss-Prot
      E9Q173
      Related
      ENSMUSP00000035433.6, ENSMUST00000048453.7
      Conserved Domains (2) summary
      cd18492
      Location:222 → 318
      BACK_BTBD16; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 16 (BTBD16)
      cl38908
      Location:84 → 230
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    2. NM_001374628.1 → NP_001361557.1  BTB/POZ domain-containing protein 16 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC115697, AC145294, AC149596
      Consensus CDS
      CCDS90340.1
      UniProtKB/TrEMBL
      A0A140LIJ9
      Related
      ENSMUSP00000146849.2, ENSMUST00000208593.2
      Conserved Domains (2) summary
      cd18492
      Location:206 → 302
      BACK_BTBD16; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 16 (BTBD16)
      cl38908
      Location:68 → 214
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      130375799..130427631
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036153181.1 → XP_036009074.1  BTB/POZ domain-containing protein 16 isoform X1

      Related
      ENSMUSP00000146827.2, ENSMUST00000207219.2
      Conserved Domains (2) summary
      cd18492
      Location:222 → 318
      BACK_BTBD16; BACK (BTB and C-terminal Kelch) domain found in BTB/POZ domain-containing protein 16 (BTBD16)
      cl38908
      Location:84 → 230
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    E9Q173.1 GenPept UniProtKB/Swiss-Prot:E9Q173

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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