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    Gm9949 predicted gene 9949 [ Mus musculus (house mouse) ]

    Gene ID: 225609, updated on 8-Feb-2024

    Summary

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    Official Symbol
    Gm9949provided by MGI
    Official Full Name
    predicted gene 9949provided by MGI
    Primary source
    MGI:MGI:3647947
    See related
    Ensembl:ENSMUSG00000054589 AllianceGenome:MGI:3647947
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    EG225609
    Expression
    Broad expression in lung adult (RPKM 2.1), liver E18 (RPKM 1.2) and 21 other tissues See more
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    Genomic context

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    See Gm9949 in Genome Data Viewer
    Location:
    18 E1; 18 35.1 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 18 NC_000084.7 (62313106..62339461)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 18 NC_000084.6 (62179961..62206390)

    Chromosome 18 - NC_000084.7Genomic Context describing neighboring genes Neighboring gene CapStarr-seq enhancer MGSCv37_chr18:62334464-62334573 Neighboring gene STARR-seq mESC enhancer starr_44769 Neighboring gene predicted gene, 36003 Neighboring gene STARR-seq mESC enhancer starr_44770 Neighboring gene adrenergic receptor, beta 2 Neighboring gene predicted gene, 36124 Neighboring gene STARR-seq mESC enhancer starr_44772 Neighboring gene 5 hydroxytryptamine (serotonin) receptor 4 Neighboring gene predicted gene, 36316 Neighboring gene X-linked lymphocyte-regulated 5C pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    2. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    3. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article
    4. Normalization and subtraction of cap-trapper-selected cDNAs to prepare full-length cDNA libraries for rapid discovery of new genes. Carninci P, et al. Genome Res, 2000 Oct. PMID 11042159, Free PMC Article
    5. Functional annotation of a full-length mouse cDNA collection. Kawai J, et al. Nature, 2001 Feb 8. PMID 11217851

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein LOC225609

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001013754.2 → NP_001013776.1  uncharacterized protein LOC225609

      Status: VALIDATED

      Source sequence(s)
      AC124430, AK042188
      UniProtKB/TrEMBL
      Q8C9F4
      Related
      ENSMUST00000067743.3

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000084.7 Reference GRCm39 C57BL/6J

      Range
      62313106..62339461
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_036161121.1 → XP_036017014.1  uncharacterized protein LOC225609 isoform X2

    2. XM_036161120.1 → XP_036017013.1  uncharacterized protein LOC225609 isoform X1

    3. XM_036161122.1 → XP_036017015.1  uncharacterized protein LOC225609 isoform X3

    4. XM_030250439.2 → XP_030106299.1  uncharacterized protein LOC225609 isoform X3

    RNA

    1. XR_003952513.2 RNA Sequence

    2. XR_004939847.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

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