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    LINC01356 long intergenic non-protein coding RNA 1356 [ Homo sapiens (human) ]

    Gene ID: 100996702, updated on 17-Sep-2024

    Summary

    Official Symbol
    LINC01356provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1356provided by HGNC
    Primary source
    HGNC:HGNC:50587
    See related
    Ensembl:ENSG00000215866 AllianceGenome:HGNC:50587
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    LIMp27
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

    See LINC01356 in Genome Data Viewer
    Location:
    1p13.2
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (112820169..112850643, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (112832725..112863199, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (113362791..113393265, complement)

    Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1205 Neighboring gene ReSE screen-validated silencer GRCh37_chr1:113266466-113266670 Neighboring gene TAFA chemokine like family member 3 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113301747-113302645 Neighboring gene nuclear transport factor 2 pseudogene 4 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113305483-113306110 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:113334060-113334634 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113334635-113335207 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:113345268-113345768 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr1:113345769-113346269 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 1519 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 1206 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113351775-113352296 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr1:113360077-113360808 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113360809-113361538 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113363733-113364462 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113385908-113386857 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113388166-113388800 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113388801-113389435 Neighboring gene long intergenic non-protein coding RNA 1357 Neighboring gene uncharacterized LOC105378911 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113407421-113407930 Neighboring gene MPRA-validated peak371 silencer Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:113408443-113408952 Neighboring gene Sharpr-MPRA regulatory region 5001 Neighboring gene H3K27ac hESC enhancer GRCh37_chr1:113420877-113421474 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr1:113423468-113424388 Neighboring gene microRNA 11399

    Genomic regions, transcripts, and products

    Expression

    • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    General gene information

    Other Names

    • Long noncoding RNA Inhibiting the mRNA of p27

    Clone Names

    • FLJ36116

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_103746.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AK093435, AL603832
      Related
      ENST00000401018.5

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

      Range
      112820169..112850643 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060925.1 Alternate T2T-CHM13v2.0

      Range
      112832725..112863199 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)