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    Gm41609 predicted gene, 41609 [ Mus musculus (house mouse) ]

    Gene ID: 105246306, updated on 17-Aug-2024

    Summary

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    Official Symbol
    Gm41609provided by MGI
    Official Full Name
    predicted gene, 41609provided by MGI
    Primary source
    MGI:MGI:5624494
    See related
    Ensembl:ENSMUSG00000117231 AllianceGenome:MGI:5624494
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Expression
    Biased expression in frontal lobe adult (RPKM 1.6), cortex adult (RPKM 1.3) and 7 other tissues See more
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    Genomic context

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    See Gm41609 in Genome Data Viewer
    Location:
    17 E1.3; 17
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 17 NC_000083.7 (71072690..71112995, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 17 NC_000083.6 (70765695..70806000, complement)

    Chromosome 17 - NC_000083.7Genomic Context describing neighboring genes Neighboring gene DLG associated protein 1 Neighboring gene predicted gene, 46581 Neighboring gene predicted gene, 36746 Neighboring gene STARR-seq mESC enhancer starr_43142 Neighboring gene STARR-seq mESC enhancer starr_43143 Neighboring gene STARR-seq mESC enhancer starr_43144 Neighboring gene STARR-positive B cell enhancer ABC_E9441 Neighboring gene STARR-seq mESC enhancer starr_43149 Neighboring gene STARR-seq mESC enhancer starr_43152 Neighboring gene STARR-seq mESC enhancer starr_43157 Neighboring gene STARR-seq mESC enhancer starr_43159 Neighboring gene STARR-positive B cell enhancer ABC_E8692 Neighboring gene STARR-positive B cell enhancer ABC_E7553 Neighboring gene predicted gene, 41610 Neighboring gene TGFB-induced factor homeobox 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Large-scale gene trapping in C57BL/6N mouse embryonic stem cells. Hansen GM, et al. Genome Res, 2008 Oct. PMID 18799693, Free PMC Article
    2. Wnk1 kinase deficiency lowers blood pressure in mice: a gene-trap screen to identify potential targets for therapeutic intervention. Zambrowicz BP, et al. Proc Natl Acad Sci U S A, 2003 Nov 25. PMID 14610273, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_168098.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC079441
      Related
      ENSMUST00000233559.2

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000083.7 Reference GRCm39 C57BL/6J

      Range
      71072690..71112995 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NR_166885.1: Suppressed sequence

      Description
      NR_166885.1: This RefSeq was removed because it was annotated on the wrong strand.
    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

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