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    GRAPL-AS1 GRAPL antisense RNA 1 [ Homo sapiens (human) ]

    Gene ID: 79999, updated on 17-Jun-2024

    Summary

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    Official Symbol
    GRAPL-AS1provided by HGNC
    Official Full Name
    GRAPL antisense RNA 1provided by HGNC
    Primary source
    HGNC:HGNC:26214
    See related
    AllianceGenome:HGNC:26214
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in spleen (RPKM 3.1), lymph node (RPKM 1.6) and 11 other tissues See more
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    Genomic context

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    See GRAPL-AS1 in Genome Data Viewer
    Location:
    17p11.2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (19154646..19162624, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (19037453..19045431)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (19057959..19065937, complement)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA, C/D box 3D Neighboring gene uncharacterized LOC124903946 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19026149-19026648 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19030843-19031574 Neighboring gene GRB2 related adaptor protein like Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19044151-19044752 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19044753-19045353 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19046411-19046923 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:19047949-19048460 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19061738-19062263 Neighboring gene kynureninase pseudogene 1 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19079065-19079566 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:19079567-19080066 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8284 Neighboring gene small nucleolar RNA, C/D box 3A

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. DNA sequence of human chromosome 17 and analysis of rearrangement in the human lineage. Zody MC, et al. Nature, 2006 Apr 20. PMID 16625196, Free PMC Article
    2. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039
    3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). Gerhard DS, et al. Genome Res, 2004 Oct. PMID 15489334, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    General gene information

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    Clone Names

    • FLJ22659, AC007952.6

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_160285.2 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC007952

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      19154646..19162624 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      19037453..19045431
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NM_024934.1: Suppressed sequence

      Description
      NM_024934.1: This RefSeq was suppressed temporarily based on the calculation that the annotated protein was shorter than a protein or proteins from a putative ortholog.
    Nucleotide Protein
    Heading Accession and Version

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