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    Gm11780 predicted gene 11780 [ Mus musculus (house mouse) ]

    Gene ID: 622019, updated on 9-Aug-2024

    Summary

    Official Symbol
    Gm11780provided by MGI
    Official Full Name
    predicted gene 11780provided by MGI
    Primary source
    MGI:MGI:3650485
    See related
    AllianceGenome:MGI:3650485
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
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    Genomic context

    See Gm11780 in Genome Data Viewer
    Location:
    4 A1; 4 2.54 cM
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (4527771..4529457, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (4527774..4529458, complement)

    Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA A830012C17 gene Neighboring gene STARR-seq mESC enhancer starr_09433 Neighboring gene STARR-seq mESC enhancer starr_09434 Neighboring gene STARR-seq mESC enhancer starr_09435 Neighboring gene STARR-seq mESC enhancer starr_09436 Neighboring gene STARR-seq mESC enhancer starr_09437 Neighboring gene STARR-seq mESC enhancer starr_09438 Neighboring gene STARR-seq mESC enhancer starr_09439 Neighboring gene STARR-seq mESC enhancer starr_09440 Neighboring gene predicted gene, 33007 Neighboring gene STARR-seq mESC enhancer starr_09442 Neighboring gene STARR-seq mESC enhancer starr_09443 Neighboring gene STARR-seq mESC enhancer starr_09444 Neighboring gene STARR-seq mESC enhancer starr_09445 Neighboring gene predicted gene, 33057 Neighboring gene predicted gene, 33182 Neighboring gene STARR-seq mESC enhancer starr_09447 Neighboring gene predicted gene, 33259

    Genomic regions, transcripts, and products

    General protein information

    Preferred Names
    Protein tyrosine phosphatase type IVA 2
    Names
    protein tyrosine phosphatase 4a2 pseudogene
    protein tyrosine phosphatase 4a2-like

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001277919.2NP_001264848.1  Protein tyrosine phosphatase type IVA 2

      Status: VALIDATED

      Source sequence(s)
      AL732514
      Conserved Domains (1) summary
      cl21483
      Location:8157
      PTPc; Protein tyrosine phosphatases (PTP) catalyze the dephosphorylation of phosphotyrosine peptides; they regulate phosphotyrosine levels in signal transduction pathways. The depth of the active site cleft renders the enzyme specific for phosphorylated Tyr ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000070.7 Reference GRCm39 C57BL/6J

      Range
      4527771..4529457 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Suppressed Reference Sequence(s)

    The following Reference Sequences have been suppressed. Explain

    1. NG_016825.1: Suppressed sequence

      Description
      NG_016825.1: This RefSeq was permanently suppressed because it is now thought that this gene does encode a protein.