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    LOC4335472 7-hydroxymethyl chlorophyll a reductase, chloroplastic-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335472, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4335472
    Gene description
    7-hydroxymethyl chlorophyll a reductase, chloroplastic-like
    Locus tag
    OSNPB_040320100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves before flowering (RPKM 74.8), roots after flowering (RPKM 65.2) and 5 other tissues See more
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    Genomic context

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    See LOC4335472 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (14945321..14950612)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (14711367..14716711)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene 7-deoxyloganetin glucosyltransferase Neighboring gene sister chromatid cohesion protein PDS5 homolog C Neighboring gene large ribosomal subunit protein mL101 (rPPR4) Neighboring gene uncharacterized LOC136356110

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables 7-hydroxymethyl chlorophyll a reductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in chlorophyll cycle IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    7-hydroxymethyl chlorophyll a reductase, chloroplastic-like
    Names
    7-hydroxymethyl chlorophyll a reductase, chloroplastic
    Os04g0320100
    Os04g0320150

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      14945321..14950612
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781299.3 → XP_015636785.1  7-hydroxymethyl chlorophyll a reductase, chloroplastic-like

      UniProtKB/Swiss-Prot
      Q0JE66, Q7XTG7
      UniProtKB/TrEMBL
      B8AM17, Q01M50
      Conserved Domains (1) summary
      cl27156
      Location:67 → 375
      FrhB_FdhB_C; Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminus
    Nucleotide Protein
    Heading Accession and Version

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