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    LOC4343620 40S ribosomal protein S11 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343620, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4343620
    Gene description
    40S ribosomal protein S11
    Locus tag
    OSNPB_070565000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1112_E08.122; OJ1773_H01.103
    Expression
    Ubiquitous expression in flower buds (RPKM 319.8), flowers (RPKM 200.8) and 6 other tissues See more
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    Genomic context

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    See LOC4343620 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22654637..22656603, complement)

    Chromosome 7 - NC_029262.1Genomic Context describing neighboring genes Neighboring gene brefeldin A-inhibited guanine nucleotide-exchange protein 5 Neighboring gene uncharacterized LOC4343619 Neighboring gene 40S ribosomal protein S11 Neighboring gene CCR4-NOT transcription complex subunit 9

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029262.1 Chromosome 7 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic small ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    40S ribosomal protein S11
    Names
    Os07g0565000
    putative 40S ribosomal protein S11

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029262.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22654637..22656603 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015791498.2 → XP_015646984.1  40S ribosomal protein S11

      UniProtKB/TrEMBL
      A0A8I3B3E5, A2XXG3, B8AU50, Q0D5F2, Q0JA67, Q7XIK5, Q7XLD0, Q8H4T5
      Conserved Domains (1) summary
      PTZ00241
      Location:1 → 145
      PTZ00241; 40S ribosomal protein S11; Provisional
    Nucleotide Protein
    Heading Accession and Version

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