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    LOC9271780 reticulon-like protein B12 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271780, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC9271780
    Gene description
    reticulon-like protein B12
    Locus tag
    OSNPB_010851300
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Biased expression in milk grains (RPKM 13.7), roots before flowering (RPKM 2.8) and 3 other tissues See more
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    Genomic context

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    See LOC9271780 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37278331..37280450, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36652403..36655709, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene heme-binding-like protein At3g10130, chloroplastic Neighboring gene fructokinase-like 1, chloroplastic Neighboring gene O-fucosyltransferase 19 Neighboring gene putative ataxin-3 homolog Neighboring gene protein DEETIOLATED 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    reticulon-like protein B12
    Names
    24 kDa seed maturation protein-like
    Os01g0851300
    P0529H11.29

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001428162.1 → NP_001415091.1  reticulon-like protein B12

      Status: VALIDATED

      Source sequence(s)
      AK101770, CI769664
      UniProtKB/TrEMBL
      A0A0P0VAH8, A2WX19, A2ZZL8, Q5N7A0

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37278331..37280450 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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