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    LOC4345994 probable lipoxygenase 8, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345994, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4345994
    Gene description
    probable lipoxygenase 8, chloroplastic
    Locus tag
    OSNPB_080509100
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    LOX9; CM-LOX2
    Expression
    Biased expression in leaves after flowering (RPKM 61.1), roots after flowering (RPKM 50.2) and 2 other tissues See more
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    Genomic context

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    Location:
    chromosome: 8
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (25387064..25396204)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (25240911..25250053)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene ETHYLENE INSENSITIVE 3-like 3 protein Neighboring gene lipoxygenase 7, chloroplastic-like Neighboring gene beta-glucosidase 27-like Neighboring gene beta-glucosidase 28-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in lipid oxidation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable lipoxygenase 8, chloroplastic
    Names
    B1168A08.28-1
    B1168A08.28-2
    LOC_Os08g39850
    OSJNBa0016N23.103-1
    OSJNBa0016N23.103-2
    lipoxygenase
    lipoxygenase-2
    lipoxygenase-like protein
    putative lipoxygenase
    NP_001390582.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403653.1 → NP_001390582.1  probable lipoxygenase 8, chloroplastic

      Status: VALIDATED

      Source sequence(s)
      AK066825, CI230324, CI440008, CI663507
      UniProtKB/Swiss-Prot
      Q0J4K1, Q7EXZ6, Q84YK8, Q9XHM6
      UniProtKB/TrEMBL
      A2YWV7, A3BUP8

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      25387064..25396204
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q84YK8.1 GenPept UniProtKB/Swiss-Prot:Q84YK8

    Gene LinkOut

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