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    LOC4351027 sodium/hydrogen exchanger 1-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351027, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4351027
    Gene description
    sodium/hydrogen exchanger 1-like
    Locus tag
    OSNPB_110648000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OsNHX2
    Expression
    Broad expression in leaves before flowering (RPKM 114.2), leaves after flowering (RPKM 59.3) and 6 other tissues See more
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    Genomic context

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    See LOC4351027 in Genome Data Viewer
    Location:
    chromosome: 11
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 11 NC_089045.1 (27720998..27725083, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 11 NC_029266.1 (25768485..25772571, complement)

    Chromosome 11 - NC_089045.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein PIK6-NP-like Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1-like Neighboring gene kinesin-like protein KIN-14O Neighboring gene uncharacterized LOC4351029

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Molecular and functional analyses of rice NHX-type Na+/H+ antiporter genes. Fukuda A, et al. Planta, 2011 Jan. PMID 20963607
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables potassium:proton antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables sodium:proton antiporter activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in potassium ion transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in proton transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of intracellular pH IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in sodium ion import across plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sodium/hydrogen exchanger 1-like
    Names
    Os11g0648000
    sodium/hydrogen exchanger 2
    sodium/proton antiporter

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089045.1 Reference ASM3414082v1 Primary Assembly

      Range
      27720998..27725083 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015762552.3 → XP_015618038.1  sodium/hydrogen exchanger 1-like

      UniProtKB/TrEMBL
      A0A6F8FGC6, Q0IRD1, Q2R0E9
      Conserved Domains (1) summary
      TIGR00840
      Location:22 → 445
      b_cpa1; sodium/hydrogen exchanger 3
    Nucleotide Protein
    Heading Accession and Version

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