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    LOC4324539 protein LNK2 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324539, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4324539
    Gene description
    protein LNK2
    Locus tag
    OSNPB_010498200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1126_G08.47
    Expression
    Ubiquitous expression in roots after flowering (RPKM 66.7), leaves after flowering (RPKM 41.0) and 6 other tissues See more
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    Genomic context

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    See LOC4324539 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (17151640..17157950)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene annexin-like protein RJ4 Neighboring gene small nucleolar RNA R71 Neighboring gene uncharacterized LOC4324540 Neighboring gene uncharacterized LOC4324541

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in circadian rhythm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein LNK2
    Names
    B1111E11.18
    Os01g0498200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17151640..17157950
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765570.2 → XP_015621056.1  protein LNK2 isoform X2

      UniProtKB/TrEMBL
      B8A8L0, B9EX27
      Conserved Domains (1) summary
      pfam04747
      Location:380 → 781
      DUF612; Protein of unknown function, DUF612

    2. XM_015765571.2 → XP_015621057.1  protein LNK2 isoform X2

      UniProtKB/TrEMBL
      B8A8L0, B9EX27
      Conserved Domains (1) summary
      pfam04747
      Location:380 → 781
      DUF612; Protein of unknown function, DUF612

    3. XM_015765574.2 → XP_015621060.1  protein LNK2 isoform X5

      Conserved Domains (1) summary
      pfam04747
      Location:380 → 681
      DUF612; Protein of unknown function, DUF612

    4. XM_015765569.2 → XP_015621055.1  protein LNK2 isoform X1

      Conserved Domains (1) summary
      pfam04747
      Location:380 → 681
      DUF612; Protein of unknown function, DUF612

    5. XM_015765572.2 → XP_015621058.1  protein LNK2 isoform X3

    6. XM_015765576.2 → XP_015621062.1  protein LNK2 isoform X7

      UniProtKB/TrEMBL
      B8A8L0
      Conserved Domains (1) summary
      pfam04747
      Location:330 → 731
      DUF612; Protein of unknown function, DUF612

    7. XM_015765573.2 → XP_015621059.1  protein LNK2 isoform X4

      Conserved Domains (1) summary
      pfam04747
      Location:330 → 631
      DUF612; Protein of unknown function, DUF612

    8. XM_015765577.2 → XP_015621063.1  protein LNK2 isoform X8

      UniProtKB/TrEMBL
      B8A8L0

    9. XM_015765575.2 → XP_015621061.1  protein LNK2 isoform X6

    Nucleotide Protein
    Heading Accession and Version

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