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    LOC4329950 zinc finger protein CONSTANS-LIKE 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4329950, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4329950
    Gene description
    zinc finger protein CONSTANS-LIKE 3
    Locus tag
    OSNPB_020610500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1476_F05.18
    Expression
    Broad expression in roots after flowering (RPKM 8.3), leaves after flowering (RPKM 4.3) and 6 other tissues See more
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    Genomic context

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    See LOC4329950 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 2 NC_089036.1 (24472529..24474014)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (23989519..23991288)

    Chromosome 2 - NC_089036.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107280200 Neighboring gene la protein 1 Neighboring gene serine/arginine-rich splicing factor RSZ23-like Neighboring gene uncharacterized LOC4329952

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. OsCOL4 is a constitutive flowering repressor upstream of Ehd1 and downstream of OsphyB. Lee YS, et al. Plant J, 2010 Jul 1. PMID 20409004
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-binding transcription factor activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of flower development IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    zinc finger protein CONSTANS-LIKE 3
    Names
    Os02g0610500
    putative COL1 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089036.1 Reference ASM3414082v1 Primary Assembly

      Range
      24472529..24474014
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015770369.3 → XP_015625855.1  zinc finger protein CONSTANS-LIKE 3

      UniProtKB/TrEMBL
      A3A8Y8, Q0DZM5, Q6K9C5
      Conserved Domains (2) summary
      cd19821
      Location:31 → 71
      Bbox1_BBX-like; B-box-type 1 zinc finger found in B-box (BBX) family of plant transcription factors and similar proteins
      pfam06203
      Location:261 → 303
      CCT; CCT motif
    Nucleotide Protein
    Heading Accession and Version

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