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    LOC4345190 peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345190, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4345190
    Gene description
    peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic
    Locus tag
    OSNPB_080292600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1705_A03.1
    Expression
    Broad expression in leaves before flowering (RPKM 55.6), leaves after flowering (RPKM 38.8) and 5 other tissues See more
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    Genomic context

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    See LOC4345190 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (11802824..11807594)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (11728252..11733107)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene homeobox-leucine zipper protein ROC6-like Neighboring gene uncharacterized LOC107282074 Neighboring gene uncharacterized LOC136351397 Neighboring gene homeobox protein knotted-1-like 13 Neighboring gene 1-aminocyclopropane-1-carboxylate oxidase homolog 1-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables peptidyl-prolyl cis-trans isomerase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in protein peptidyl-prolyl isomerization IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in chloroplast IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic
    Names
    OSJNBb0075O18.114
    Os08g0292600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      11802824..11807594
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795282.3 → XP_015650768.1  peptidyl-prolyl cis-trans isomerase CYP28, chloroplastic

      UniProtKB/TrEMBL
      B9G049, Q0J6N5, Q84YY4
      Conserved Domains (1) summary
      cl00197
      Location:125 → 278
      cyclophilin; cyclophilin-type peptidylprolyl cis- trans isomerases. This family contains eukaryotic, bacterial and archeal proteins which exhibit a peptidylprolyl cis- trans isomerases activity (PPIase, Rotamase) and in addition bind the immunosuppressive drug ...
    Nucleotide Protein
    Heading Accession and Version

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