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    LOC4337276 probable protein phosphatase 2C 45 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4337276, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4337276
    Gene description
    probable protein phosphatase 2C 45
    Locus tag
    OSNPB_040659500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    24K23.16; OsPP2C45; OsJ_015762
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 36.7), roots after flowering (RPKM 35.3) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 4
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (34169439..34173742, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (33649619..33653878, complement)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene cysteine-rich receptor-like protein kinase 6 Neighboring gene protein EMSY-LIKE 3 Neighboring gene BTB/POZ and MATH domain-containing protein 1 Neighboring gene probable amino acid permease 7

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Large-scale identification of expressed sequence tags involved in rice and rice blast fungus interaction. Jantasuriyarat C, et al. Plant Physiol, 2005 May. PMID 15888683, Free PMC Article
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables cation binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine phosphatase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in peptidyl-threonine dephosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    probable protein phosphatase 2C 45
    Names
    LOC_Os04g56450
    OSJNBa0011F23.20
    OSJNBa0015K02.7
    putative protein phosphatase 2C
    NP_001389381.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402452.1 → NP_001389381.1  probable protein phosphatase 2C 45

      Status: VALIDATED

      Source sequence(s)
      AK059302, CB642176, CI068627, CI078288, CI523372
      UniProtKB/Swiss-Prot
      A0A0P0WFU4, Q0J9D6, Q7XR06
      UniProtKB/TrEMBL
      A2XYI8, Q01I02, Q8S3P1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      34169439..34173742 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q7XR06.2 GenPept UniProtKB/Swiss-Prot:Q7XR06

    Gene LinkOut

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