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    LOC4327187 pentatricopeptide repeat-containing protein At5g25630 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4327187, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4327187
    Gene description
    pentatricopeptide repeat-containing protein At5g25630
    Locus tag
    OSNPB_010228400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 3.5), roots after flowering (RPKM 2.6) and 6 other tissues See more
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    Genomic context

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    See LOC4327187 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (7102822..7106166)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (7092036..7095317)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At3g47570 Neighboring gene uncharacterized LOC4327186 Neighboring gene uncharacterized LOC4327188 Neighboring gene uncharacterized LOC112937640 Neighboring gene glyoxylate/hydroxypyruvate/pyruvate reductase 2KGR

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    pentatricopeptide repeat-containing protein At5g25630
    Names
    Os01g0228400
    P0452F10.21
    putative leaf protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      7102822..7106166
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015761181.2 → XP_015616667.1  pentatricopeptide repeat-containing protein At5g25630

      UniProtKB/TrEMBL
      A0A0P0V054, A0A979HJY8, A2WMC9, Q0JPD7, Q8W0A6
      Conserved Domains (2) summary
      PLN03218
      Location:112 → 471
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:186 → 213
      PPR; PPR repeat [structural motif]

    2. XM_015761194.3 → XP_015616680.1  pentatricopeptide repeat-containing protein At5g25630

      UniProtKB/TrEMBL
      A0A0P0V054, A0A979HJY8, A2WMC9, Q0JPD7, Q8W0A6
      Conserved Domains (2) summary
      PLN03218
      Location:112 → 471
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:186 → 213
      PPR; PPR repeat [structural motif]

    3. XM_015761187.3 → XP_015616673.1  pentatricopeptide repeat-containing protein At5g25630

      UniProtKB/TrEMBL
      A0A0P0V054, A0A979HJY8, A2WMC9, Q0JPD7, Q8W0A6
      Conserved Domains (2) summary
      PLN03218
      Location:112 → 471
      PLN03218; maturation of RBCL 1; Provisional
      sd00004
      Location:186 → 213
      PPR; PPR repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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