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    LOC4324180 long chain acyl-CoA synthetase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324180, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324180
    Gene description
    long chain acyl-CoA synthetase 4
    Locus tag
    OSNPB_010655800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in leaves after flowering (RPKM 89.9), roots after flowering (RPKM 88.8) and 6 other tissues See more
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    Genomic context

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    See LOC4324180 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (27211166..27219235)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (26628856..26636957)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene probable plastid-lipid-associated protein 14, chloroplastic Neighboring gene uncharacterized LOC112937666 Neighboring gene probable protein phosphatase 2C 8 Neighboring gene transcription factor WRKY19-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables long-chain fatty acid-CoA ligase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in fatty acid metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in endoplasmic reticulum IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    long chain acyl-CoA synthetase 4
    Names
    OSJNBa0049H05.27
    Os01g0655800
    putative acyl-CoA synthetase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      27211166..27219235
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765893.3 → XP_015621379.1  long chain acyl-CoA synthetase 4 isoform X1

      UniProtKB/TrEMBL
      Q5SN76
      Conserved Domains (2) summary
      PLN02614
      Location:2 → 685
      PLN02614; long-chain acyl-CoA synthetase
      cd05927
      Location:73 → 681
      LC-FACS_euk; Eukaryotic long-chain fatty acid CoA synthetase (LC-FACS)

    2. XM_015765894.3 → XP_015621380.1  long chain acyl-CoA synthetase 4 isoform X2

      UniProtKB/TrEMBL
      B8A6V4, B9EYE7, Q5SN76
      Conserved Domains (1) summary
      cl17068
      Location:2 → 656
      AFD_class_I; Adenylate forming domain, Class I superfamily
    Nucleotide Protein
    Heading Accession and Version

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