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    LOC4348876 non-lysosomal glucosylceramidase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4348876, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4348876
    Gene description
    non-lysosomal glucosylceramidase
    Locus tag
    OSNPB_100473400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in mature seeds (RPKM 36.7), flowers (RPKM 23.5) and 6 other tissues See more
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    Genomic context

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    See LOC4348876 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 10 NC_029265.1 (17584548..17592697, complement)

    Chromosome 10 - NC_029265.1Genomic Context describing neighboring genes Neighboring gene 3-ketoacyl-CoA synthase 12 Neighboring gene uncharacterized LOC9269837 Neighboring gene putative disease resistance protein RGA3 Neighboring gene long-chain-alcohol oxidase FAO1-like

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029265.1 Chromosome 10 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables beta-glucosidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables glucosylceramidase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in glucosylceramide catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    non-lysosomal glucosylceramidase
    Names
    Os10g0473400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029265.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17584548..17592697 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015758974.1 → XP_015614460.1  non-lysosomal glucosylceramidase

      UniProtKB/TrEMBL
      B8BHF7, Q0IX18, Q7XDG7
      Conserved Domains (2) summary
      pfam04685
      Location:557 → 918
      DUF608; Glycosyl-hydrolase family 116, catalytic region
      pfam12215
      Location:102 → 421
      Glyco_hydr_116N; beta-glucosidase 2, glycosyl-hydrolase family 116 N-term
    Nucleotide Protein
    Heading Accession and Version

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