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    LOC4345970 pseudouridine-5'-phosphate glycosidase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4345970, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4345970
    Gene description
    pseudouridine-5'-phosphate glycosidase
    Locus tag
    OSNPB_080504200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1134_H03.5-1; OJ1134_H03.5-2
    Expression
    Ubiquitous expression in flower buds (RPKM 8.2), roots before flowering (RPKM 7.4) and 6 other tissues See more
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    Genomic context

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    See LOC4345970 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    11
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (24929573..24934805, complement)

    Chromosome 8 - NC_029263.1Genomic Context describing neighboring genes Neighboring gene beta-(1,2)-xylosyltransferase Neighboring gene zinc finger protein WIP2 Neighboring gene thylakoid lumenal 19 kDa protein, chloroplastic Neighboring gene uncharacterized LOC4345972

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029263.1 Chromosome 8 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables pseudouridylate synthase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4345970
    Names
    Erwinia chrysanthemi IndA protein homolog-like
    Os08g0504200
    Os08g0504400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029263.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24929573..24934805 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795444.2 → XP_015650930.1  uncharacterized protein LOC4345970 isoform X1

      UniProtKB/TrEMBL
      A0A0P0XHD2, A0A0P0XHZ7, Q0J4M3, Q6ZK87
      Conserved Domains (1) summary
      pfam04227
      Location:21 → 344
      Indigoidine_A; Indigoidine synthase A like protein

    2. XM_015795445.2 → XP_015650931.1  uncharacterized protein LOC4345970 isoform X2

      UniProtKB/TrEMBL
      A0A0P0XHZ7, B8BC97, B9G1P5, Q0J4M3, Q6ZK88
      Conserved Domains (1) summary
      pfam04227
      Location:20 → 310
      Indigoidine_A; Indigoidine synthase A like protein
    Nucleotide Protein
    Heading Accession and Version

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