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    LOC4324810 alpha-glucan phosphorylase, H isozyme [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4324810, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4324810
    Gene description
    alpha-glucan phosphorylase, H isozyme
    Locus tag
    OSNPB_010851700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in flowers (RPKM 364.8), flower buds (RPKM 240.1) and 5 other tissues See more
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    Genomic context

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    See LOC4324810 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    15
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (37296121..37302278, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (36670235..36676509, complement)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene putative ataxin-3 homolog Neighboring gene protein DEETIOLATED 2 Neighboring gene uncharacterized LOC107279844 Neighboring gene calmodulin-binding receptor-like cytoplasmic kinase 1 Neighboring gene probable anion transporter 3, chloroplastic

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables glycogen phosphorylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in glycogen catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-glucan phosphorylase, H isozyme
    Names
    Os01g0851700
    P0529H11.34
    putative alpha 1,4-glucan phosphorylase H isozyme

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      37296121..37302278 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015765789.3 → XP_015621275.1  alpha-glucan phosphorylase, H isozyme

      UniProtKB/TrEMBL
      A0A0P0VAE5, B8ACF5, Q0JHP1, Q8LQ33
      Conserved Domains (1) summary
      cd04300
      Location:32 → 835
      GT35_Glycogen_Phosphorylase; glycogen phosphorylase and similar proteins
    Nucleotide Protein
    Heading Accession and Version

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