U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    LOC4326465 non-specific phospholipase C6 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326465, updated on 21-Dec-2023

    Summary

    Go to the top of the page Help
    Gene symbol
    LOC4326465
    Gene description
    non-specific phospholipase C6
    Locus tag
    OSNPB_010102000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See LOC4326465 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (89664..91683, complement)

    Chromosome 1 - NC_029256.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4326464 Neighboring gene uncharacterized LOC107278092 Neighboring gene uncharacterized LOC107281753 Neighboring gene thylakoid lumenal 17.9 kDa protein, chloroplastic

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_029256.1 Chromosome 1 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Rice Non-Specific Phospholipase C6 Is Involved in Mesocotyl Elongation. Yang D, et al. Plant Cell Physiol, 2021 Oct 11. PMID 34021760
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. Rice Non-Specific Phospholipase C6 Is Involved in Mesocotyl Elongation.
      Title: Rice Non-Specific Phospholipase C6 Is Involved in Mesocotyl Elongation.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity, acting on ester bonds IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in phospholipid catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    non-specific phospholipase C6
    Names
    Os01g0102000
    P0672D08.27
    phospholipase -like

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029256.1 Reference IRGSP-1.0 Primary Assembly

      Range
      89664..91683 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778489.2 → XP_015633975.1  non-specific phospholipase C6

      UniProtKB/TrEMBL
      A0A0P0UX25, A2WJM5, Q0JRG8, Q655M2
      Conserved Domains (1) summary
      pfam04185
      Location:43 → 413
      Phosphoesterase; Phosphoesterase family
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials