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    LOC9271882 protein FAR1-RELATED SEQUENCE 9 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 9271882, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC9271882
    Gene description
    protein FAR1-RELATED SEQUENCE 9
    Locus tag
    OSNPB_070496300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 5.7), roots after flowering (RPKM 5.1) and 6 other tissues See more
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    Genomic context

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    See LOC9271882 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    6
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (18823445..18828937, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (18597882..18603495, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene NAD-dependent malic enzyme 62 kDa isoform, mitochondrial Neighboring gene uncharacterized LOC136357224 Neighboring gene expansin-like B1 Neighboring gene uncharacterized LOC136357435 Neighboring gene protein FAR1-RELATED SEQUENCE 6

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein FAR1-RELATED SEQUENCE 9
    Names
    Os07g0496300

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      18823445..18828937 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066312194.1 → XP_066168291.1  protein FAR1-RELATED SEQUENCE 9

      UniProtKB/TrEMBL
      A0A0P0X654, C7J599

    2. XM_015792087.3 → XP_015647573.1  protein FAR1-RELATED SEQUENCE 9

      UniProtKB/TrEMBL
      A0A0P0X654, C7J599
      Conserved Domains (4) summary
      smart00575
      Location:705 → 731
      ZnF_PMZ; plant mutator transposase zinc finger
      PLN03097
      Location:211 → 796
      FHY3; Protein FAR-RED ELONGATED HYPOCOTYL 3; Provisional
      pfam03101
      Location:83 → 179
      FAR1; FAR1 DNA-binding domain
      pfam10551
      Location:419 → 508
      MULE; MULE transposase domain

    RNA

    1. XR_010742417.1 RNA Sequence

    2. XR_010742418.1 RNA Sequence

    3. XR_001547775.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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