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    LOC4343627 caffeoylshikimate esterase [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4343627, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4343627
    Gene description
    caffeoylshikimate esterase
    Locus tag
    OSNPB_070565700
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1773_H01.113
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    Genomic context

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    See LOC4343627 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    1
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (22922625..22923899, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (22693190..22694669, complement)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene protein STRUBBELIG-RECEPTOR FAMILY 3 Neighboring gene uncharacterized LOC4343625 Neighboring gene peptidyl-prolyl cis-trans isomerase CYP37, chloroplastic Neighboring gene putative cell wall protein Neighboring gene U6 spliceosomal RNA

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables lipase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    caffeoylshikimate esterase
    Names
    Os07g0565700
    putative lysophospholipase homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      22922625..22923899 complement
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015789217.3 → XP_015644703.1  caffeoylshikimate esterase

      UniProtKB/TrEMBL
      A0A0P0X821, A2YMQ3, Q8H4S9
      Conserved Domains (1) summary
      PLN02298
      Location:1 → 333
      PLN02298; hydrolase, alpha/beta fold family protein
    Nucleotide Protein
    Heading Accession and Version

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