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    LOC4335438 wall-associated receptor kinase 4 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335438, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4335438
    Gene description
    wall-associated receptor kinase 4
    Locus tag
    OSNPB_040308100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Broad expression in roots after flowering (RPKM 12.6), leaves after flowering (RPKM 8.7) and 5 other tissues See more
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    Genomic context

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    See LOC4335438 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (14156444..14161568)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (13919906..13925117)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112938739 Neighboring gene wall-associated receptor kinase 5 Neighboring gene wall-associated receptor kinase-like 22 Neighboring gene uncharacterized LOC9270149 Neighboring gene uncharacterized LOC136356115 Neighboring gene 23 kDa jasmonate-induced protein

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables polysaccharide binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables protein serine/threonine kinase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell surface receptor signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    involved_in protein phosphorylation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    wall-associated receptor kinase 4
    Names
    Os04g0308100

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      14156444..14161568
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_066309649.1 → XP_066165746.1  wall-associated receptor kinase 4 isoform X1

    2. XM_015780413.3 → XP_015635899.1  wall-associated receptor kinase 4 isoform X3

      UniProtKB/TrEMBL
      B9FED5
      Conserved Domains (4) summary
      smart00179
      Location:473 → 500
      EGF_CA; Calcium-binding EGF-like domain
      smart00221
      Location:602 → 865
      STYKc; Protein kinase; unclassified specificity
      pfam13947
      Location:54 → 165
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:604 → 870
      PKc_like; Protein Kinases, catalytic domain

    3. XM_066309650.1 → XP_066165747.1  wall-associated receptor kinase 4 isoform X2

    4. XM_015780414.3 → XP_015635900.1  wall-associated receptor kinase 4 isoform X4

      UniProtKB/TrEMBL
      B9FED5, Q01KX2, Q7XRN6
      Conserved Domains (4) summary
      smart00179
      Location:472 → 499
      EGF_CA; Calcium-binding EGF-like domain
      smart00221
      Location:601 → 864
      STYKc; Protein kinase; unclassified specificity
      pfam13947
      Location:54 → 165
      GUB_WAK_bind; Wall-associated receptor kinase galacturonan-binding
      cl21453
      Location:603 → 869
      PKc_like; Protein Kinases, catalytic domain
    Nucleotide Protein
    Heading Accession and Version

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