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    LOC4341119 splicing factor ESS-2 homolog [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4341119, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4341119
    Gene description
    splicing factor ESS-2 homolog
    Locus tag
    OSNPB_060502900
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0564B04.9
    Expression
    Ubiquitous expression in roots before flowering (RPKM 28.1), leaves before flowering (RPKM 10.7) and 6 other tissues See more
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    Genomic context

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    See LOC4341119 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (17812054..17816170)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene O-fucosyltransferase 1-like Neighboring gene uncharacterized LOC112939364 Neighboring gene ABC transporter G family member 4 Neighboring gene uncharacterized LOC112939365

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Component Evidence Code Pubs
    part_of catalytic step 2 spliceosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    splicing factor ESS-2 homolog
    Names
    Os06g0502900
    protein DGCR14
    putative ES2 protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      17812054..17816170
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015788959.2 → XP_015644445.1  splicing factor ESS-2 homolog isoform X1

      UniProtKB/TrEMBL
      A2YDC6
      Conserved Domains (1) summary
      pfam09751
      Location:54 → 449
      Es2; Nuclear protein Es2

    2. XM_015788960.2 → XP_015644446.1  splicing factor ESS-2 homolog isoform X2

      UniProtKB/TrEMBL
      A0A0P0WWY1, A2YDC6, Q656K0
      Conserved Domains (1) summary
      pfam09751
      Location:54 → 449
      Es2; Nuclear protein Es2

    RNA

    1. XR_001547085.2 RNA Sequence

    2. XR_001547086.2 RNA Sequence

    3. XR_001547087.2 RNA Sequence

    4. XR_001547088.2 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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