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    LOC4347262 alpha-amylase isozyme 3A-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4347262, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4347262
    Gene description
    alpha-amylase isozyme 3A-like
    Locus tag
    OSNPB_090457400
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    AMY3A; AMY1.2; RAmy3A; OsJ_29629; B1045B05.8
    Expression
    Restricted expression toward mature seeds (RPKM 27.8) See more
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    Genomic context

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    See LOC4347262 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 9 NC_089043.1 (21671566..21673863)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 9 NC_029264.1 (17288990..17291232)

    Chromosome 9 - NC_089043.1Genomic Context describing neighboring genes Neighboring gene replication protein A 70 kDa DNA-binding subunit D Neighboring gene abscisic acid 8'-hydroxylase 3-like Neighboring gene alpha-amylase isozyme 3B Neighboring gene uncharacterized LOC4347264 Neighboring gene alpha-amylase isozyme 3C-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables alpha-amylase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables calcium ion binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    alpha-amylase isozyme 3A
    Names
    1,4-alpha-D-glucan glucanohydrolase
    Alpha-amylase isozyme 3A precursor (1,4-alpha-D-glucan glucanohydrolase)
    LOC_Os09g28400
    NP_001390735.1
    NP_001390737.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001403806.1 → NP_001390735.1  alpha-amylase isozyme 3A isoform 1 precursor

      Status: VALIDATED

      Source sequence(s)
      AK063988, CI047777, CI067604, CI311092
      UniProtKB/Swiss-Prot
      P27932, Q0J184, Q67U05
      UniProtKB/TrEMBL
      B8BCL1

    2. NM_001403808.1 → NP_001390737.1  alpha-amylase isozyme 3A isoform 2 precursor

      Status: VALIDATED

      Source sequence(s)
      AK099330, CI097803, CI256680, CI304375, CI408697
      UniProtKB/TrEMBL
      B8BCL1

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089043.1 Reference ASM3414082v1 Primary Assembly

      Range
      21671566..21673863
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P27932.2 GenPept UniProtKB/Swiss-Prot:P27932

    Gene LinkOut

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