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    LOC4344943 uncharacterized LOC4344943 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344943, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4344943
    Gene description
    uncharacterized LOC4344943
    Locus tag
    OSNPB_080208400
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 8.6), flowers (RPKM 8.5) and 6 other tissues See more
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    Genomic context

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    See LOC4344943 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (6370391..6375608)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (6319121..6324376)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene aspartic proteinase CDR1 Neighboring gene aspartic proteinase nepenthesin-1 Neighboring gene zinc finger BED domain-containing protein RICESLEEPER 1-like Neighboring gene uncharacterized LOC136351325

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4344943
    Names
    Os08g0208400

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      6370391..6375608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015795059.3 → XP_015650545.1  uncharacterized protein LOC4344943

      UniProtKB/TrEMBL
      A0A0P0XD41, Q0J7A0
      Conserved Domains (3) summary
      pfam02992
      Location:295 → 501
      Transposase_21; Transposase family tnp2
      pfam13960
      Location:687 → 800
      DUF4218; Domain of unknown function (DUF4218)
      pfam13963
      Location:3 → 75
      Transpos_assoc; Transposase-associated domain

    2. XM_015795057.3 → XP_015650543.1  uncharacterized protein LOC4344943

      UniProtKB/TrEMBL
      A0A0P0XD41, Q0J7A0
      Conserved Domains (3) summary
      pfam02992
      Location:295 → 501
      Transposase_21; Transposase family tnp2
      pfam13960
      Location:687 → 800
      DUF4218; Domain of unknown function (DUF4218)
      pfam13963
      Location:3 → 75
      Transpos_assoc; Transposase-associated domain

    3. XM_015795058.3 → XP_015650544.1  uncharacterized protein LOC4344943

      UniProtKB/TrEMBL
      A0A0P0XD41, Q0J7A0
      Conserved Domains (3) summary
      pfam02992
      Location:295 → 501
      Transposase_21; Transposase family tnp2
      pfam13960
      Location:687 → 800
      DUF4218; Domain of unknown function (DUF4218)
      pfam13963
      Location:3 → 75
      Transpos_assoc; Transposase-associated domain
    Nucleotide Protein
    Heading Accession and Version

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