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    LOC4342347 uncharacterized LOC4342347 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4342347, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4342347
    Gene description
    uncharacterized LOC4342347
    Locus tag
    OSNPB_070134500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots before flowering (RPKM 8.3), milk grains (RPKM 7.9) and 6 other tissues See more
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    Genomic context

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    See LOC4342347 in Genome Data Viewer
    Location:
    chromosome: 7
    Exon count:
    16
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 7 NC_089041.1 (1852061..1859968)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 7 NC_029262.1 (1840875..1848823)

    Chromosome 7 - NC_089041.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat receptor-like serine/threonine-protein kinase BAM1 Neighboring gene probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial Neighboring gene probable LRR receptor-like serine/threonine-protein kinase At2g16250 Neighboring gene transcription termination factor MTERF2, chloroplastic Neighboring gene succinate dehydrogenase [ubiquinone] flavoprotein subunit, mitochondrial-like

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4342347
    Names
    Os07g0134500
    P0507H12.22

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089041.1 Reference ASM3414082v1 Primary Assembly

      Range
      1852061..1859968
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015792214.3 → XP_015647700.1  uncharacterized protein LOC4342347

      UniProtKB/TrEMBL
      B8B728
      Conserved Domains (1) summary
      COG1409
      Location:488 → 590
      CpdA; 3',5'-cyclic AMP phosphodiesterase CpdA [Signal transduction mechanisms]

    RNA

    1. XR_010742674.1 RNA Sequence

    2. XR_010742673.1 RNA Sequence

    3. XR_010742675.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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