LOC4343950 uncharacterized hydrolase YugF [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4343950
Gene description: uncharacterized hydrolase YugF
Locus tag: OSNPB_070622700
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Expression: Broad expression in roots before flowering (RPKM 5.2), flower buds (RPKM 4.1) and 6 other tissues See more
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Genomic context

Location:: chromosome: 7

Exon count:: 5

Annotation release	Status	Assembly	Chr	Location
RS_2024_06	current	ASM3414082v1 (GCF_034140825.1)	7	NC_089041.1 (25979528..25986801, complement)
102	previous assembly	IRGSP-1.0 (GCF_001433935.1)	7	NC_029262.1 (25753346..25760698, complement)

Chromosome 7 - NC_089041.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables catalytic activity	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: uncharacterized hydrolase YugF

Names: Os07g0622700; P0524E08.104; hydrolase-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001422276.1 → NP_001409205.1 uncharacterized hydrolase YugF

Status: VALIDATED

Source sequence(s)

AK107120

UniProtKB/TrEMBL

B8B4X6, Q0D4J2, Q7XI46

RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM3414082v1 Primary Assembly

Genomic

NC_089041.1 Reference ASM3414082v1 Primary Assembly

Range

25979528..25986801 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_026027056.2 → XP_025882841.1 uncharacterized hydrolase YugF isoform X1

Conserved Domains (1) summary

COG0596
Location:59 → 284

MhpC; Pimeloyl-ACP methyl ester carboxylesterase [Coenzyme transport and metabolism, General function prediction only]