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    LOC4339231 22.3 kDa class VI heat shock protein-like [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4339231, updated on 21-Jun-2023

    Summary

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    Gene symbol
    LOC4339231
    Gene description
    22.3 kDa class VI heat shock protein-like
    Locus tag
    OSNPB_050500500
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    HSP22.3; OsHsp22.3; OsJ_19091; OJ1057_B02.14
    Expression
    Ubiquitous expression in roots before flowering (RPKM 2.4), leaves after flowering (RPKM 2.4) and 6 other tissues See more
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    Genomic context

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    See LOC4339231 in Genome Data Viewer
    Location:
    chromosome: 5
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 5 NC_029260.1 (24627100..24629422)

    Chromosome 5 - NC_029260.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC4339230 Neighboring gene uncharacterized LOC9272665 Neighboring gene scarecrow-like protein 32 Neighboring gene uncharacterized LOC4339233

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029260.1 Chromosome 5 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    22.3 kDa class VI heat shock protein
    Names
    22.3 kDa heat shock protein
    LOC_Os05g42120

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001420689.1 → NP_001407618.1  22.3 kDa class VI heat shock protein

      Status: VALIDATED

      Source sequence(s)
      AK110627, AP014961
      UniProtKB/Swiss-Prot
      A0A0P0WP72, Q6AUW3
      UniProtKB/TrEMBL
      A2Y675

    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029260.1 Reference IRGSP-1.0 Primary Assembly

      Range
      24627100..24629422
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015782765.2 → XP_015638251.1  22.3 kDa class VI heat shock protein

      UniProtKB/Swiss-Prot
      Q6AUW3
      Conserved Domains (1) summary
      cd06472
      Location:94 → 191
      ACD_ScHsp26_like; Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as ...
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q6AUW3.1 GenPept UniProtKB/Swiss-Prot:Q6AUW3

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