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    LOC4326744 U11/U12 small nuclear ribonucleoprotein 59 kDa protein [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4326744, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4326744
    Gene description
    U11/U12 small nuclear ribonucleoprotein 59 kDa protein
    Locus tag
    OSNPB_010226500
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in mature seeds (RPKM 10.6), flower buds (RPKM 6.4) and 6 other tissues See more
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    Genomic context

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    See LOC4326744 in Genome Data Viewer
    Location:
    chromosome: 1
    Exon count:
    10
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 1 NC_089035.1 (6990114..6996228)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 1 NC_029256.1 (6979548..6985775)

    Chromosome 1 - NC_089035.1Genomic Context describing neighboring genes Neighboring gene reticulon-like protein B1 Neighboring gene uncharacterized LOC4326743 Neighboring gene S-type anion channel SLAH2 Neighboring gene uncharacterized LOC4326746

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    U11/U12 small nuclear ribonucleoprotein 59 kDa protein
    Names
    Os01g0226500
    P0443E07.24-1
    P0492F05.33-1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089035.1 Reference ASM3414082v1 Primary Assembly

      Range
      6990114..6996228
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771334.3 → XP_015626820.1  U11/U12 small nuclear ribonucleoprotein 59 kDa protein

      UniProtKB/TrEMBL
      B8AAY7, Q0JPE9, Q5NAF5, Q5NAK5
      Conserved Domains (2) summary
      pfam04870
      Location:193 → 277
      Moulting_cycle; Moulting cycle
      pfam16021
      Location:186 → 425
      PDCD7; Programmed cell death protein 7

    2. XM_015771268.3 → XP_015626754.1  U11/U12 small nuclear ribonucleoprotein 59 kDa protein

      UniProtKB/TrEMBL
      B8AAY7, Q0JPE9, Q5NAF5, Q5NAK5
      Conserved Domains (2) summary
      pfam04870
      Location:193 → 277
      Moulting_cycle; Moulting cycle
      pfam16021
      Location:186 → 425
      PDCD7; Programmed cell death protein 7

    3. XM_066305963.1 → XP_066162060.1  U11/U12 small nuclear ribonucleoprotein 59 kDa protein

      UniProtKB/TrEMBL
      B8AAY7, Q0JPE9, Q5NAF5, Q5NAK5

    RNA

    1. XR_010738130.1 RNA Sequence

    2. XR_010738129.1 RNA Sequence

    3. XR_003241355.2 RNA Sequence

    4. XR_001543805.3 RNA Sequence

    5. XR_001543801.3 RNA Sequence

    6. XR_001543810.3 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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