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    LOC4335963 sm-like protein LSM1B [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335963, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4335963
    Gene description
    sm-like protein LSM1B
    Locus tag
    OSNPB_040445800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 28.0), leaves after flowering (RPKM 26.6) and 6 other tissues See more
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    Genomic context

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    See LOC4335963 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22223718..22227191)

    Chromosome 4 - NC_029259.1Genomic Context describing neighboring genes Neighboring gene trihelix transcription factor ASIL2 Neighboring gene 3-oxoacyl-[acyl-carrier-protein] synthase I, chloroplastic Neighboring gene uncharacterized LOC107277379 Neighboring gene protein LURP-one-related 6 Neighboring gene pentatricopeptide repeat-containing protein At2g06000

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029259.1 Chromosome 4 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA cap binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in deadenylation-dependent decapping of nuclear-transcribed mRNA IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of Lsm1-7-Pat1 complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in P-body IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    sm-like protein LSM1B
    Names
    Os04g0445800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029259.1 Reference IRGSP-1.0 Primary Assembly

      Range
      22223718..22227191
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015778094.2 → XP_015633580.1  sm-like protein LSM1B

      UniProtKB/TrEMBL
      B8AUC9, B9FFE2, Q01J34, Q0JCW8, Q7XUX0
      Conserved Domains (1) summary
      cd01728
      Location:13 → 83
      LSm1; Like-Sm protein 1
    Nucleotide Protein
    Heading Accession and Version

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