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    LOC4333157 uncharacterized LOC4333157 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333157, updated on 1-Aug-2024

    Summary

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    Gene symbol
    LOC4333157
    Gene description
    uncharacterized LOC4333157
    Locus tag
    OSNPB_030425800
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    myby2
    Expression
    Ubiquitous expression in roots after flowering (RPKM 45.6), leaves after flowering (RPKM 41.5) and 6 other tissues See more
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    Genomic context

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    Location:
    chromosome: 3
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (18236544..18240016)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17780383..17784125)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene diacylglycerol kinase 1 Neighboring gene UDP-glucose 6-dehydrogenase 1 Neighboring gene zinc finger protein ZAT9 Neighboring gene cysteine-rich receptor-like protein kinase 44

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Development of an efficient method for the isolation of factors involved in gene transcription during rice embryo development. Ye R, et al. Plant J, 2004 Apr. PMID 15078336
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized protein LOC4333157
    Names
    Os03g0425800

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      18236544..18240016
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015776409.3 → XP_015631895.1  uncharacterized protein LOC4333157

      UniProtKB/TrEMBL
      B7EQF2, B9F947, Q75GS6
      Conserved Domains (1) summary
      cd00167
      Location:337 → 385
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    2. XM_066308390.1 → XP_066164487.1  uncharacterized protein LOC4333157

      UniProtKB/TrEMBL
      B7EQF2, B9F947, Q75GS6

    3. XM_015776408.3 → XP_015631894.1  uncharacterized protein LOC4333157

      UniProtKB/TrEMBL
      B7EQF2, B9F947, Q75GS6
      Conserved Domains (1) summary
      cd00167
      Location:337 → 385
      SANT; 'SWI3, ADA2, N-CoR and TFIIIB' DNA-binding domains. Tandem copies of the domain bind telomeric DNA tandem repeatsas part of the capping complex. Binding is sequence dependent for repeats which contain the G/C rich motif [C2-3 A (CA)1-6]. The domain is ...

    4. XM_066308389.1 → XP_066164486.1  uncharacterized protein LOC4333157

      UniProtKB/TrEMBL
      B7EQF2, B9F947, Q75GS6
    Nucleotide Protein
    Heading Accession and Version

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