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    LOC4335936 uncharacterized LOC4335936 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4335936, updated on 16-Jul-2024

    Summary

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    Gene symbol
    LOC4335936
    Gene description
    uncharacterized LOC4335936
    Locus tag
    OSNPB_040442200
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in roots after flowering (RPKM 19.1), leaves before flowering (RPKM 14.3) and 6 other tissues See more
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    Genomic context

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    See LOC4335936 in Genome Data Viewer
    Location:
    chromosome: 4
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 4 NC_089038.1 (22419389..22425614)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 4 NC_029259.1 (22017844..22024136)

    Chromosome 4 - NC_089038.1Genomic Context describing neighboring genes Neighboring gene auxin response factor 9-like Neighboring gene polyadenylate-binding protein-interacting protein 7 Neighboring gene two-component response regulator ORR1-like Neighboring gene uncharacterized LOC136355945 Neighboring gene chloride channel protein CLC-c

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    uncharacterized LOC4335936
    Names
    Os04g0442200

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001402371.1 → NP_001389300.1  uncharacterized LOC4335936

      Status: VALIDATED

      Source sequence(s)
      AK073492, AU093952, CI641054, CI643448
      UniProtKB/TrEMBL
      A0A0P0WAM8, B9FFD0, Q0JCZ2

    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089038.1 Reference ASM3414082v1 Primary Assembly

      Range
      22419389..22425614
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015781505.3 → XP_015636991.1  uncharacterized LOC4335936 isoform X1

      UniProtKB/TrEMBL
      B7EM86
      Conserved Domains (1) summary
      pfam04339
      Location:2 → 376
      FemAB_like; Peptidogalycan biosysnthesis/recognition
    Nucleotide Protein
    Heading Accession and Version

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