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    [ Saccharomyces cerevisiae S288C ]

    Gene ID: 853224, updated on 11-Sep-2024

    Summary

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    Primary source
    SGD:S000003741
    Locus tag
    YJL206C
    See related
    AllianceGenome:SGD:S000003741; FungiDB:YJL206C; VEuPathDB:YJL206C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable DNA binding activity; DNA-binding transcription factor activity, RNA polymerase II-specific; and zinc ion binding activity. Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    1
    Sequence:
    Chromosome: X; NC_001142.9 (47659..49935, complement)

    Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene ribonuclease Neighboring gene Laa1p Neighboring gene Nce101p Neighboring gene Rcy1p

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001142.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Complex transcriptional responses to macromolecular damaging agents: regulatory responses specific for SN2 alkylation and the MAG1 gene. Begley TJ, et al. Cold Spring Harb Symp Quant Biol, 2000. PMID 12760054
    2. Dynamic reprogramming of transcription factors to and from the subtelomere. Mak HC, et al. Genome Res, 2009 Jun. PMID 19372386, Free PMC Article
    3. New weakly expressed cell cycle-regulated genes in yeast. de Lichtenberg U, et al. Yeast, 2005 Nov. PMID 16278933
    4. Phenotypic analysis of genes encoding yeast zinc cluster proteins. Akache B, et al. Nucleic Acids Res, 2001 May 15. PMID 11353088, Free PMC Article
    5. Fusion, fission, and transport control asymmetric inheritance of mitochondria and protein aggregates. Böckler S, et al. J Cell Biol, 2017 Aug 7. PMID 28615194, Free PMC Article

    See all (23) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables zinc ion binding RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in positive regulation of transcription by RNA polymerase II IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  
    is_active_in nucleus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    uncharacterized protein
    NP_012329.1
    • hypothetical protein; similar to transcriptional regulators from the Zn[2]-Cys[6] binuclear cluster protein family; mRNA is weakly cell cycle regulated, peaking in S phase; induced rapidly upon MMS treatment

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001142.9 Reference assembly

      Range
      47659..49935 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001181638.1 → NP_012329.1  TPA: uncharacterized protein YJL206C [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_012329.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VVY8, P39529
      UniProtKB/TrEMBL
      C8ZB14, N1P8H4
      Conserved Domains (2) summary
      cd12148
      Location:181 → 614
      fungal_TF_MHR; fungal transcription factor regulatory middle homology region
      pfam00172
      Location:45 → 82
      Zn_clus; Fungal Zn(2)-Cys(6) binuclear cluster domain
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P39529.1

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