U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Potefam3e POTE ankyrin domain family member 3E [ Mus musculus (house mouse) ]

    Gene ID: 626415, updated on 8-Feb-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Potefam3eprovided by MGI
    Official Full Name
    POTE ankyrin domain family member 3Eprovided by MGI
    Primary source
    MGI:MGI:1923056
    See related
    Ensembl:ENSMUSG00000096265 AllianceGenome:MGI:1923056
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    TSAP; Pote3e; 4930467E23Rik
    Summary
    Orthologous to several human genes including POTEB (POTE ankyrin domain family member B); POTEC (POTE ankyrin domain family member C); and POTEH (POTE ankyrin domain family member H). [provided by Alliance of Genome Resources, Apr 2022]
    Expression
    Broad expression in testis adult (RPKM 14.0), frontal lobe adult (RPKM 3.8) and 22 other tissues See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Potefam3e in Genome Data Viewer
    Location:
    8 A1.3; 8 10.35 cM
    Exon count:
    13
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (19754327..19803619)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (19704311..19753603)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 35998 Neighboring gene predicted gene, 29789 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19683498-19683799 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19686031-19686332 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19686651-19686952 Neighboring gene STARR-seq mESC enhancer starr_20869 Neighboring gene cadherin 11 pseudogene Neighboring gene STARR-positive B cell enhancer mm9_chr8:19708792-19709092 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19716263-19716564 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19718186-19718486 Neighboring gene STARR-positive B cell enhancer mm9_chr8:19720998-19721298 Neighboring gene ribosomal protein S7 pseudogene Neighboring gene predicted gene, 53404 Neighboring gene STARR-positive B cell enhancer ABC_E3770 Neighboring gene NSFL1 (p97) cofactor (p47) pseudogene

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Identification and characterization of TSAP, a novel gene specifically expressed in testis during spermatogenesis. Bin L, et al. Mol Reprod Dev, 2007 Sep. PMID 17342726
    2. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article
    3. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    4. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636
    5. RIKEN integrated sequence analysis (RISA) system--384-format sequencing pipeline with 384 multicapillary sequencer. Shibata K, et al. Genome Res, 2000 Nov. PMID 11076861, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. TSAP protein likely plays a role in spermatogenesis.
      Title: Identification and characterization of TSAP, a novel gene specifically expressed in testis during spermatogenesis.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    testis-specific gene with ankyrin repeats and PEST domain

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001039553.2 → NP_001034642.2  testis-specific gene with ankyrin repeats and PEST domain

      Status: VALIDATED

      Source sequence(s)
      AC148089
      Consensus CDS
      CCDS52498.1
      UniProtKB/TrEMBL
      B9EK96, D3Z1P8
      Related
      ENSMUSP00000096508.4, ENSMUST00000098909.5
      Conserved Domains (4) summary
      cd00204
      Location:79 → 203
      ANK; ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins. The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other ...
      pfam12796
      Location:89 → 180
      Ank_2; Ankyrin repeats (3 copies)
      pfam13637
      Location:54 → 105
      Ank_4; Ankyrin repeats (many copies)
      sd00045
      Location:86 → 115
      ANK; ANK repeat [structural motif]

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      19754327..19803619
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_017312928.1 → XP_017168417.1  testis-specific gene with ankyrin repeats and PEST domain isoform X1

      UniProtKB/TrEMBL
      Q9D5C0
      Conserved Domains (2) summary
      sd00045
      Location:74 → 103
      ANK; ANK repeat [structural motif]
      pfam12796
      Location:77 → 168
      Ank_2; Ankyrin repeats (3 copies)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools