LOC4340934 cyclin-dependent kinase F-1-like [Oryza sativa Japonica Group (Japanese rice)] - Gene

Summary

Gene symbol: LOC4340934
Gene description: cyclin-dependent kinase F-1-like
Locus tag: OSNPB_060334400
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Oryza sativa Japonica Group
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
Also known as: CDKF-1; CDKF;1
Expression: Ubiquitous expression in leaves after flowering (RPKM 33.0), roots after flowering (RPKM 29.4) and 6 other tissues See more
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Genomic context

Location:: chromosome: 6

Exon count:: 2

Annotation release	Status	Assembly	Chr	Location
102	current	IRGSP-1.0 (GCF_001433935.1)	6	NC_029261.1 (13302258..13306569, complement)

Chromosome 6 - NC_029261.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:: NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

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Expression

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See details

Project title: Transcriptome profiling of various organs at different developmental stages in rice
Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
BioProject: PRJNA243371
Publication: PMID 26387578
Analysis date: Fri Dec 15 20:02:59 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

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General gene information

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Gene Ontology Provided by RefSeq

Function	Evidence Code	Pubs
enables ATP binding	IEA Inferred from Electronic Annotation more info	PubMed
enables cyclin-dependent protein kinase activating kinase activity	IEA Inferred from Electronic Annotation more info	PubMed

Process	Evidence Code	Pubs
involved_in protein phosphorylation	IEA Inferred from Electronic Annotation more info	PubMed

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info	PubMed

General protein information

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Preferred Names: cyclin-dependent kinase F-1

Names: LOC_Os06g22820; OSJNBa0012F14.17; putative cyclin-dependent kinase-activating kinase 1At

XP_015644444.1

EC 2.7.11.22

EC 2.7.11.23

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001423982.1 → NP_001410911.1 cyclin-dependent kinase F-1

Status: VALIDATED

Source sequence(s)

AK120969, AU057033, CB643384, CB652263, CI163328

UniProtKB/Swiss-Prot

A0A0P0WWF8, A2YCH5, Q5Z754

RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IRGSP-1.0 Primary Assembly

Genomic

NC_029261.1 Reference IRGSP-1.0 Primary Assembly

Range

13302258..13306569 complement

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_015788958.2 → XP_015644444.1 cyclin-dependent kinase F-1

UniProtKB/Swiss-Prot

Q5Z754

Conserved Domains (1) summary

cl21453
Location:23 → 419

PKc_like; Protein Kinases, catalytic domain