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    LOC4330458 probable pinoresinol-lariciresinol reductase 3 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330458, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4330458
    Gene description
    probable pinoresinol-lariciresinol reductase 3
    Locus tag
    OSNPB_020705000
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    P0680A05.1
    Expression
    Broad expression in flower buds (RPKM 12.9), flowers (RPKM 12.8) and 6 other tissues See more
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    Genomic context

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    See LOC4330458 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (29094997..29097460, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene soluble inorganic pyrophosphatase-like Neighboring gene replication factor C subunit 5-like Neighboring gene pheophytinase, chloroplastic Neighboring gene tubby-like F-box protein 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    isoflavone reductase homolog IRL1; probable pinoresinol-lariciresinol reductase 3
    Names
    Os02g0705000
    P0724B10.42
    putative phenylcoumaran benzylic ether reductase PT1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      29094997..29097460 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026022838.1 → XP_025878623.1  probable pinoresinol-lariciresinol reductase 3 isoform X1

      UniProtKB/TrEMBL
      B8AH95
      Conserved Domains (1) summary
      cl21454
      Location:10 → 275
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    2. XM_026022839.1 → XP_025878624.1  isoflavone reductase homolog IRL1 isoform X3

      UniProtKB/TrEMBL
      B8AH95
      Conserved Domains (1) summary
      cl21454
      Location:10 → 177
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins

    3. XM_015769648.2 → XP_015625134.1  probable pinoresinol-lariciresinol reductase 3 isoform X2

      UniProtKB/TrEMBL
      A0A0P0VNQ0, B8AH95, Q0DYB0, Q6YVH7
      Conserved Domains (1) summary
      cl21454
      Location:10 → 236
      NADB_Rossmann; Rossmann-fold NAD(P)(+)-binding proteins
    Nucleotide Protein
    Heading Accession and Version

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