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    LOC4330260 heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4330260, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4330260
    Gene description
    heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
    Locus tag
    OSNPB_020668100
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Also known as
    OJ1725_H08.13
    Expression
    Ubiquitous expression in leaves before flowering (RPKM 23.6), roots before flowering (RPKM 19.4) and 6 other tissues See more
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    Genomic context

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    See LOC4330260 in Genome Data Viewer
    Location:
    chromosome: 2
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 2 NC_029257.1 (27120990..27124478, complement)

    Chromosome 2 - NC_029257.1Genomic Context describing neighboring genes Neighboring gene hippocampus abundant transcript 1 protein Neighboring gene uncharacterized LOC4330258 Neighboring gene uncharacterized LOC107280161 Neighboring gene mechanosensitive ion channel protein 5 Neighboring gene U4 spliceosomal RNA Neighboring gene tRNA pseudouridine synthase A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029257.1 Chromosome 2 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. The Nucleotide-Dependent Interactome of Rice Heterotrimeric G-Protein α -Subunit. Biswal AK, et al. Proteomics, 2019 May. PMID 30866160
    2. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables prenyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in isoprenoid biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic
    Names
    Os02g0668100
    putative geranylgeranyl diphosphate synthase

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029257.1 Reference IRGSP-1.0 Primary Assembly

      Range
      27120990..27124478 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015771377.2 → XP_015626863.1  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VMU3, A2X847, Q6ET88
      Conserved Domains (1) summary
      cd00685
      Location:65 → 331
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    2. XM_015771378.2 → XP_015626864.1  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VMU3, A2X847, Q6ET88
      Conserved Domains (1) summary
      cd00685
      Location:65 → 331
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail

    3. XM_026022773.1 → XP_025878558.1  heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic

      UniProtKB/TrEMBL
      A0A0P0VMU3, A2X847, Q6ET88
      Conserved Domains (1) summary
      cd00685
      Location:65 → 331
      Trans_IPPS_HT; Trans-Isoprenyl Diphosphate Synthases, head-to-tail
    Nucleotide Protein
    Heading Accession and Version

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