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    LOC4344899 photosystem II 10 kDa polypeptide, chloroplastic [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4344899, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4344899
    Gene description
    photosystem II 10 kDa polypeptide, chloroplastic
    Locus tag
    OSNPB_080200300
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
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    Genomic context

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    See LOC4344899 in Genome Data Viewer
    Location:
    chromosome: 8
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 8 NC_089042.1 (5857289..5859664, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 8 NC_029263.1 (5806490..5808453, complement)

    Chromosome 8 - NC_089042.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC9269405 Neighboring gene acyl-[acyl-carrier-protein] desaturase 7, chloroplastic-like Neighboring gene KH domain-containing protein At4g18375 Neighboring gene cold-responsive protein kinase 1

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764
    2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
    3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Process Evidence Code Pubs
    involved_in photosynthesis IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of photosystem II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of photosystem II oxygen evolving complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in thylakoid membrane IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    photosystem II 10 kDa polypeptide, chloroplastic
    Names
    Os08g0200300
    P0556A11.19
    photosystem II 10K protein
    putative photosystem II 10K protein

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089042.1 Reference ASM3414082v1 Primary Assembly

      Range
      5857289..5859664 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015794299.2 → XP_015649785.1  photosystem II 10 kDa polypeptide, chloroplastic isoform X1

      UniProtKB/TrEMBL
      A0A218KL41, A2YS77, Q0J7E1, Q6ZBV1
      Conserved Domains (1) summary
      PLN00053
      Location:16 → 130
      PLN00053; photosystem II subunit R; Provisional

    2. XM_015794300.2 → XP_015649786.1  photosystem II 10 kDa polypeptide, chloroplastic isoform X2

      Conserved Domains (1) summary
      cl04707
      Location:16 → 63
      PsbR; Photosystem II 10 kDa polypeptide PsbR
    Nucleotide Protein
    Heading Accession and Version

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