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    LOC4333143 uncharacterized LOC4333143 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4333143, updated on 17-Jul-2024

    Summary

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    Gene symbol
    LOC4333143
    Gene description
    uncharacterized LOC4333143
    Locus tag
    OSNPB_030423200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 18.0), leaves before flowering (RPKM 16.7) and 6 other tissues See more
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    Genomic context

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    See LOC4333143 in Genome Data Viewer
    Location:
    chromosome: 3
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 3 NC_089037.1 (18072253..18078355, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 3 NC_029258.1 (17616248..17622347, complement)

    Chromosome 3 - NC_089037.1Genomic Context describing neighboring genes Neighboring gene disease resistance protein Pik-2-like Neighboring gene F-box protein At5g39250 Neighboring gene acyl-[acyl-carrier-protein] desaturase 4, chloroplastic-like Neighboring gene U-box domain-containing protein 57

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables N-acetylglucosaminyldiphosphodolichol N-acetylglucosaminyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in dolichol-linked oligosaccharide biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of UDP-N-acetylglucosamine transferase complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    uncharacterized protein LOC4333143
    Names
    Os03g0423200
    UDP-N-acetylglucosamine transferase subunit ALG14 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089037.1 Reference ASM3414082v1 Primary Assembly

      Range
      18072253..18078355 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015777368.2 → XP_015632854.1  uncharacterized protein LOC4333143

      UniProtKB/TrEMBL
      B8AK52, B9F936, Q84ME6
      Conserved Domains (1) summary
      pfam08660
      Location:48 → 228
      Alg14; Oligosaccharide biosynthesis protein Alg14 like

    2. XM_066308691.1 → XP_066164788.1  uncharacterized protein LOC4333143

    3. XM_026024212.2 → XP_025879997.1  uncharacterized protein LOC4333143

      UniProtKB/TrEMBL
      B8AK52, B9F936, Q84ME6
      Conserved Domains (1) summary
      pfam08660
      Location:48 → 228
      Alg14; Oligosaccharide biosynthesis protein Alg14 like

    4. XM_066308690.1 → XP_066164787.1  uncharacterized protein LOC4333143

    5. XM_015777367.2 → XP_015632853.1  uncharacterized protein LOC4333143

      UniProtKB/TrEMBL
      B8AK52, B9F936, Q84ME6
      Conserved Domains (1) summary
      pfam08660
      Location:48 → 228
      Alg14; Oligosaccharide biosynthesis protein Alg14 like
    Nucleotide Protein
    Heading Accession and Version

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