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    LOC4340848 60S ribosomal protein L15 [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4340848, updated on 21-Dec-2023

    Summary

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    Gene symbol
    LOC4340848
    Gene description
    60S ribosomal protein L15
    Locus tag
    OSNPB_060308200
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in leaves after flowering (RPKM 6.3), roots after flowering (RPKM 4.7) and 6 other tissues See more
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    Genomic context

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    See LOC4340848 in Genome Data Viewer
    Location:
    chromosome: 6
    Exon count:
    4
    Annotation release Status Assembly Chr Location
    102 current IRGSP-1.0 (GCF_001433935.1) 6 NC_029261.1 (11692749..11696308)

    Chromosome 6 - NC_029261.1Genomic Context describing neighboring genes Neighboring gene trigger factor-like protein TIG, Chloroplastic Neighboring gene protein-tyrosine-phosphatase IBR5 Neighboring gene 65-kDa microtubule-associated protein 1 Neighboring gene protein HOMOLOG OF MAMMALIAN LYST-INTERACTING PROTEIN 5

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_029261.1 Chromosome 6 Reference IRGSP-1.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cytoplasmic translation IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    part_of cytosolic large ribosomal subunit IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    LOW QUALITY PROTEIN: 60S ribosomal protein L15
    Names
    Os06g0308200
    P0414E10.3-1
    P0414E10.3-2
    P0417E03.29-1
    P0417E03.29-2
    putative ribosomal protein L15

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Oryza sativa Japonica Group Annotation Release 102 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference IRGSP-1.0 Primary Assembly

    Genomic

    1. NC_029261.1 Reference IRGSP-1.0 Primary Assembly

      Range
      11692749..11696308
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_026026324.1 → XP_025882109.1  LOW QUALITY PROTEIN: 60S ribosomal protein L15

      Conserved Domains (1) summary
      cl02977
      Location:1 → 202
      Ribosomal_L15e; Ribosomal L15
    Nucleotide Protein
    Heading Accession and Version

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