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    LOC4351982 DNA-(apurinic or apyrimidinic site) endonuclease [ Oryza sativa Japonica Group (Japanese rice) ]

    Gene ID: 4351982, updated on 12-Jul-2024

    Summary

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    Gene symbol
    LOC4351982
    Gene description
    DNA-(apurinic or apyrimidinic site) endonuclease
    Locus tag
    OSNPB_120279600
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Oryza sativa Japonica Group
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza; Oryza sativa
    Expression
    Ubiquitous expression in flower buds (RPKM 6.0), flowers (RPKM 5.1) and 6 other tissues See more
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    Genomic context

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    See LOC4351982 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    9
    Annotation release Status Assembly Chr Location
    RS_2024_06 current ASM3414082v1 (GCF_034140825.1) 12 NC_089046.1 (10568233..10577154, complement)
    102 previous assembly IRGSP-1.0 (GCF_001433935.1) 12 NC_029267.1 (10506832..10515806, complement)

    Chromosome 12 - NC_089046.1Genomic Context describing neighboring genes Neighboring gene DExH-box ATP-dependent RNA helicase DExH9 Neighboring gene lysine-specific demethylase JMJ705-like Neighboring gene uncharacterized LOC107277093 Neighboring gene uncharacterized LOC107279606

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Transcriptome profiling of various organs at different developmental stages in rice
    • Description: Transcriptom profiling in flower buds, flowers, flag leaves and roots sampled before flowering and after flowering, milk grains and mature seeds
    • BioProject: PRJNA243371
    • Publication: PMID 26387578
    • Analysis date: Fri Dec 15 20:02:59 2017

    Bibliography

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    Related articles in PubMed

    1. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Rice Full-Length cDNA Consortium, et al. Science, 2003 Jul 18. PMID 12869764

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables DNA-(apurinic or apyrimidinic site) endonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables double-stranded DNA 3'-5' DNA exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables phosphoric diester hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in base-excision repair IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    DNA-(apurinic or apyrimidinic site) endonuclease
    Names
    DNA-(apurinic or apyrimidinic site) lyase
    Os12g0279600

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_034140825.1-RS_2024_06

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ASM3414082v1 Primary Assembly

    Genomic

    1. NC_089046.1 Reference ASM3414082v1 Primary Assembly

      Range
      10568233..10577154 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_015763228.3 → XP_015618714.1  DNA-(apurinic or apyrimidinic site) endonuclease

      UniProtKB/TrEMBL
      A0A8J8YGE4, B8BP44, B9GCN4, Q0INX3, Q2QTX4
      Conserved Domains (1) summary
      cd09087
      Location:61 → 366
      Ape1-like_AP-endo; Human Ape1-like subfamily of the ExoIII family apurinic/apyrimidinic (AP) endonucleases
    Nucleotide Protein
    Heading Accession and Version

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